MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA Brain:28.7 nTPM
GTEx:2.9 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:5.5 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2219 Male, age 76, both hemispheres 29.3
1830 Male, age 51, unknown 28.4
2666 Male, age 74, left hemisphere 26.3
1833 Male, age 53, unknown 26.1
1870 Female, age 42, unknown 25.4
2019 Male, age 18, unknown 25.2
1827 Male, age 72, unknown 24.8
2411 Female, age 72, unknown 23.3
2828 Female, age 72, unknown 21.1
2586 Male, age 75, left hemisphere 19.6
Dorsal raphe nucleus
nTPM: 21.8
2016 Female, age 72, unknown 23.1
2750 Male, age 76, both hemispheres 22.7
1828 Male, age 53, unknown 22.5
2298 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 19.7
Inferior colliculus
nTPM: 26.2
2849 Male, age 72, unknown 32.1
1890 Male, age 53, unknown 25.5
1848 Female, age 42, unknown 25.2
2097 Female, age 72, unknown 22.0
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 21.7
1947 Male, age 18, unknown 22.0
1795 Male, age 51, unknown 21.7
2502 Female, age 75, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 27.3
2850 Male, age 76, both hemispheres 32.4
1831 Male, age 72, unknown 28.1
1840 Male, age 53, unknown 24.8
2464 Female, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 28.7
2140 Male, age 76, both hemispheres 32.7
2053 Male, age 18, unknown 26.7
2272 Male, age 74, both hemispheres 26.6
Pretectal area
nTPM: 25.0
2667 Female, age 75, unknown 26.9
1944 Female, age 72, unknown 26.5
2407 Male, age 75, both hemispheres 26.0
1815 Male, age 53, unknown 25.1
2316 Male, age 76, right hemisphere 25.1
2825 Male, age 18, unknown 25.1
2224 Female, age 72, unknown 25.0
1817 Female, age 42, unknown 24.6
1816 Male, age 51, unknown 24.4
2273 Male, age 74, both hemispheres 23.5
2007 Male, age 72, unknown 23.2
Red nucleus
nTPM: 24.3
2588 Male, age 74, left hemisphere 28.6
2584 Male, age 75, left hemisphere 25.8
1904 Male, age 53, unknown 25.7
2725 Female, age 75, unknown 25.6
2823 Male, age 76, right hemisphere 24.8
2503 Female, age 72, unknown 24.3
1865 Male, age 51, unknown 23.7
2785 Male, age 18, unknown 23.6
1954 Female, age 42, unknown 22.7
2227 Male, age 72, unknown 22.7
2769 Male, age 72, unknown 22.4
1821 Female, age 72, unknown 22.0
Substantia nigra
nTPM: 24.7
2409 Female, age 72, unknown 33.0
2241 Male, age 72, unknown 26.1
2699 Male, age 18, unknown 25.7
2665 Male, age 74, both hemispheres 23.7
1889 Female, age 72, unknown 23.6
1916 Female, age 42, unknown 23.6
2583 Male, age 75, right hemisphere 23.4
2590 Female, age 75, unknown 23.4
1941 Male, age 53, unknown 22.9
1851 Male, age 51, unknown 21.5
Superior colliculus
nTPM: 25.1
1895 Male, age 76, right hemisphere 30.3
1839 Male, age 51, unknown 27.3
1913 Female, age 42, unknown 26.2
2261 Male, age 18, unknown 25.4
1995 Male, age 72, unknown 25.1
2087 Female, age 72, unknown 24.7
2587 Male, age 74, left hemisphere 24.7
1796 Male, age 53, unknown 23.5
2668 Female, age 75, unknown 23.4
2664 Male, age 75, both hemispheres 20.6
Ventral tegmental area
nTPM: 23.0
2218 Male, age 76, both hemispheres 25.5
2021 Male, age 53, unknown 25.0
2223 Female, age 72, unknown 24.2
1942 Male, age 51, unknown 21.9
1915 Female, age 42, unknown 20.9
2410 Female, age 72, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.9
Samples: 139

Max nTPM: 5.1
Min nTPM: 1.3
Std nTPM: 0.7
Median nTPM: 2.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 5.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 5.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 5.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 4.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 4.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 4.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 4.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 14.9
Sample C Male 15.1
Sample D Male 15.0
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 16.0
Sample C Male 16.3
Sample D Male 17.4
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 16.0
Min nTPM: 15.2
Sample B Female 16.0
Sample C Male 15.6
Sample D Male 15.2
Superior colliculi
nTPM: 14.2
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 13.2
Sample C Male 14.5
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 5.6
Sample C Female 6.1
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69013104 Antisense, RP_050309_02_A05, Mouse strain C57BL/6J (56 days, male) 8.6

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