MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.7 nTPM
HPA Brain:103.6 nTPM
GTEx:45.7 nTPM
FANTOM5:126.0 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:17.2 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.4
2411 Female, age 72, unknown 118.0
1870 Female, age 42, unknown 101.5
1830 Male, age 51, unknown 94.6
1833 Male, age 53, unknown 84.3
2019 Male, age 18, unknown 78.5
2586 Male, age 75, left hemisphere 78.2
2828 Female, age 72, unknown 77.7
2219 Male, age 76, both hemispheres 77.0
2666 Male, age 74, left hemisphere 76.0
1827 Male, age 72, unknown 67.8
Dorsal raphe nucleus
nTPM: 74.8
2750 Male, age 76, both hemispheres 135.9
2047 Male, age 72, unknown 65.4
1828 Male, age 53, unknown 62.6
2298 Female, age 72, unknown 58.5
2016 Female, age 72, unknown 51.6
Inferior colliculus
nTPM: 47.4
1890 Male, age 53, unknown 61.1
1848 Female, age 42, unknown 46.2
2097 Female, age 72, unknown 45.6
2849 Male, age 72, unknown 36.6
Median raphe nucleus
nTPM: 97.7
2220 Male, age 76, midline 97.7
Periaquaductal grey, anterior
nTPM: 63.6
1947 Male, age 18, unknown 74.9
1795 Male, age 51, unknown 63.8
2502 Female, age 75, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 38.1
2464 Female, age 72, unknown 51.1
1831 Male, age 72, unknown 46.6
1840 Male, age 53, unknown 29.3
2850 Male, age 76, both hemispheres 25.5
Periaquaductal grey, lateral
nTPM: 44.8
2053 Male, age 18, unknown 55.7
2272 Male, age 74, both hemispheres 52.7
2140 Male, age 76, both hemispheres 26.0
Pretectal area
nTPM: 55.0
2407 Male, age 75, both hemispheres 72.0
1815 Male, age 53, unknown 68.6
2825 Male, age 18, unknown 61.3
2007 Male, age 72, unknown 61.0
2273 Male, age 74, both hemispheres 59.0
2316 Male, age 76, right hemisphere 52.3
1817 Female, age 42, unknown 50.1
2224 Female, age 72, unknown 46.8
2667 Female, age 75, unknown 45.3
1944 Female, age 72, unknown 44.5
1816 Male, age 51, unknown 44.4
Red nucleus
nTPM: 103.6
2584 Male, age 75, left hemisphere 128.2
2588 Male, age 74, left hemisphere 126.9
1904 Male, age 53, unknown 115.5
1865 Male, age 51, unknown 115.2
2769 Male, age 72, unknown 104.2
2227 Male, age 72, unknown 104.1
2503 Female, age 72, unknown 99.6
1821 Female, age 72, unknown 99.3
2823 Male, age 76, right hemisphere 97.2
2725 Female, age 75, unknown 94.8
2785 Male, age 18, unknown 82.9
1954 Female, age 42, unknown 75.6
Substantia nigra
nTPM: 77.8
2583 Male, age 75, right hemisphere 107.5
1916 Female, age 42, unknown 92.9
1851 Male, age 51, unknown 92.2
1941 Male, age 53, unknown 75.1
2241 Male, age 72, unknown 74.4
2590 Female, age 75, unknown 73.4
1889 Female, age 72, unknown 68.0
2409 Female, age 72, unknown 67.8
2699 Male, age 18, unknown 64.2
2665 Male, age 74, both hemispheres 62.5
Superior colliculus
nTPM: 69.5
2668 Female, age 75, unknown 107.5
1913 Female, age 42, unknown 105.3
2587 Male, age 74, left hemisphere 85.1
1995 Male, age 72, unknown 78.2
1796 Male, age 53, unknown 64.8
2261 Male, age 18, unknown 59.6
1839 Male, age 51, unknown 56.9
1895 Male, age 76, right hemisphere 50.0
2087 Female, age 72, unknown 46.9
2664 Male, age 75, both hemispheres 40.9
Ventral tegmental area
nTPM: 97.5
2223 Female, age 72, unknown 151.1
2218 Male, age 76, both hemispheres 102.3
2410 Female, age 72, unknown 100.6
1942 Male, age 51, unknown 87.0
2021 Male, age 53, unknown 73.3
1915 Female, age 42, unknown 71.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.7
Samples: 139

Max nTPM: 181.2
Min nTPM: 5.5
Std nTPM: 26.2
Median nTPM: 43.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 181.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 166.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 132.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 110.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 109.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 98.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 89.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 84.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 84.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 80.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 78.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.0
FF:10158-103A5 76 years, female 126.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 42.0
Min nTPM: 14.5
Sample A Female 42.0
Sample B Female 14.5
Sample C Male 41.1
Sample D Male 29.7
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 136.0
Min nTPM: 12.1
Sample A Female 136.0
Sample B Female 14.4
Sample C Male 40.0
Sample D Male 12.1
Periaqueductal gray
nTPM: 11.6
Samples: 3

Max nTPM: 14.1
Min nTPM: 9.3
Sample B Female 9.3
Sample C Male 14.1
Sample D Male 11.3
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 7.2
Sample A Female 14.6
Sample B Female 7.2
Sample C Male 19.2
Sample D Male 21.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 17.6
Min nTPM: 16.7
Sample A Male 16.7
Sample B Male 17.1
Sample C Female 17.4
Sample D Female 17.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71587595 Antisense, RP_050915_04_E10, Mouse strain C57BL/6J (56 days, male) 3.6
73635770 Antisense, RP_050915_04_E10, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org