MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:15.2 nTPM
GTEx:10.0 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:50.5 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
2586 Male, age 75, left hemisphere 16.3
1827 Male, age 72, unknown 14.1
2828 Female, age 72, unknown 13.6
2666 Male, age 74, left hemisphere 13.3
1870 Female, age 42, unknown 12.9
2219 Male, age 76, both hemispheres 12.9
1833 Male, age 53, unknown 12.7
2019 Male, age 18, unknown 12.7
2411 Female, age 72, unknown 12.4
1830 Male, age 51, unknown 11.8
Dorsal raphe nucleus
nTPM: 12.5
2298 Female, age 72, unknown 13.8
1828 Male, age 53, unknown 12.7
2750 Male, age 76, both hemispheres 12.2
2016 Female, age 72, unknown 11.9
2047 Male, age 72, unknown 11.7
Inferior colliculus
nTPM: 13.4
2849 Male, age 72, unknown 14.9
1848 Female, age 42, unknown 13.6
2097 Female, age 72, unknown 13.3
1890 Male, age 53, unknown 11.8
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 13.6
2502 Female, age 75, unknown 14.2
1795 Male, age 51, unknown 13.6
1947 Male, age 18, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 12.3
1840 Male, age 53, unknown 14.0
1831 Male, age 72, unknown 12.5
2464 Female, age 72, unknown 11.4
2850 Male, age 76, both hemispheres 11.3
Periaquaductal grey, lateral
nTPM: 12.0
2053 Male, age 18, unknown 12.3
2272 Male, age 74, both hemispheres 12.1
2140 Male, age 76, both hemispheres 11.6
Pretectal area
nTPM: 13.5
2007 Male, age 72, unknown 15.4
2825 Male, age 18, unknown 14.3
1816 Male, age 51, unknown 14.2
2407 Male, age 75, both hemispheres 14.1
1817 Female, age 42, unknown 14.0
2224 Female, age 72, unknown 13.9
1944 Female, age 72, unknown 13.6
1815 Male, age 53, unknown 12.9
2273 Male, age 74, both hemispheres 12.8
2667 Female, age 75, unknown 11.8
2316 Male, age 76, right hemisphere 11.3
Red nucleus
nTPM: 11.8
2588 Male, age 74, left hemisphere 14.1
2584 Male, age 75, left hemisphere 13.4
2227 Male, age 72, unknown 12.5
2725 Female, age 75, unknown 12.2
1821 Female, age 72, unknown 11.9
1954 Female, age 42, unknown 11.9
2503 Female, age 72, unknown 11.8
2785 Male, age 18, unknown 11.6
2769 Male, age 72, unknown 11.2
2823 Male, age 76, right hemisphere 10.9
1865 Male, age 51, unknown 10.1
1904 Male, age 53, unknown 9.9
Substantia nigra
nTPM: 15.2
1916 Female, age 42, unknown 21.5
1941 Male, age 53, unknown 17.7
1851 Male, age 51, unknown 16.2
2665 Male, age 74, both hemispheres 15.0
2699 Male, age 18, unknown 14.8
2241 Male, age 72, unknown 14.2
2590 Female, age 75, unknown 14.2
1889 Female, age 72, unknown 13.3
2409 Female, age 72, unknown 12.7
2583 Male, age 75, right hemisphere 12.7
Superior colliculus
nTPM: 12.9
1839 Male, age 51, unknown 15.2
1796 Male, age 53, unknown 14.9
2664 Male, age 75, both hemispheres 14.6
2668 Female, age 75, unknown 14.1
1895 Male, age 76, right hemisphere 13.7
2261 Male, age 18, unknown 13.2
2587 Male, age 74, left hemisphere 12.4
2087 Female, age 72, unknown 12.1
1995 Male, age 72, unknown 10.2
1913 Female, age 42, unknown 8.6
Ventral tegmental area
nTPM: 14.2
2218 Male, age 76, both hemispheres 15.8
1915 Female, age 42, unknown 15.5
2410 Female, age 72, unknown 14.1
1942 Male, age 51, unknown 13.5
2223 Female, age 72, unknown 13.4
2021 Male, age 53, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 139

Max nTPM: 22.0
Min nTPM: 4.6
Std nTPM: 2.6
Median nTPM: 9.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 15.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 14.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 14.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 14.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 14.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 14.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.6
FF:10158-103A5 76 years, female 10.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.7
Sample A Female 12.7
Sample B Female 9.3
Sample C Male 11.3
Sample D Male 8.7
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.1
Sample A Female 12.5
Sample B Female 11.1
Sample C Male 12.9
Sample D Male 12.3
Periaqueductal gray
nTPM: 10.8
Samples: 3

Max nTPM: 12.2
Min nTPM: 9.4
Sample B Female 10.9
Sample C Male 12.2
Sample D Male 9.4
Superior colliculi
nTPM: 13.0
Samples: 4

Max nTPM: 15.4
Min nTPM: 9.6
Sample A Female 15.4
Sample B Female 9.6
Sample C Male 13.2
Sample D Male 13.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.5
Samples: 4

Max nTPM: 55.3
Min nTPM: 46.6
Sample A Male 55.3
Sample B Male 46.6
Sample C Female 47.0
Sample D Female 53.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69173319 Antisense, RP_050329_01_D03, Mouse strain C57BL/6J (56 days, male) 4.2
77464918 Antisense, RP_070129_02_E01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org