PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:51.5 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:49.5 nTPM
Mouse:21.8 nTPM
Allen mouse:4.9 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 51.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 36.8
2188 Female, age 91, both hemispheres 39.9
2301 Female, age 85, both hemispheres 37.8
1984 Male, age 76, both hemispheres 35.5
2090 Male, age 80, both hemispheres 34.2
Area postrema
nTPM: 32.8
2054 Male, age 76, both hemispheres 37.9
2306 Male, age 80, both hemispheres 32.8
2799 Male, age 61, both hemispheres 27.9
Dorsal cochlear nucleus
nTPM: 37.7
2802 Male, age 74, right hemisphere 44.9
2187 Female, age 91, both hemispheres 42.4
2058 Male, age 76, both hemispheres 35.5
2370 Male, age 61, both hemispheres 32.7
2378 Male, age 80, both hemispheres 32.7
Dorsal medullary reticular nucleus
nTPM: 41.2
2040 Female, age 85, both hemispheres 42.8
2373 Male, age 61, both hemispheres 42.6
2088 Male, age 76, both hemispheres 38.3
Dorsal motor vagal complex
nTPM: 42.0
2133 Female, age 91, both hemispheres 49.8
2844 Male, age 55, unknown 47.7
2000 Male, age 74, unknown 44.3
2643 Male, age 74, both hemispheres 42.4
2813 Female, age 72, unknown 41.2
2797 Male, age 61, both hemispheres 40.5
2807 Female, age 85, both hemispheres 37.0
2185 Male, age 76, both hemispheres 33.1
Dorsal tegmental nucleus
nTPM: 35.4
2083 Male, age 80, both hemispheres 43.1
2326 Male, age 74, both hemispheres 42.5
1936 Male, age 76, left hemisphere 32.5
2358 Male, age 61, both hemispheres 23.5
Dorsolateral tegmental area
nTPM: 36.0
2654 Male, age 80, both hemispheres 41.7
2360 Male, age 74, both hemispheres 39.0
2141 Male, age 76, both hemispheres 38.4
2751 Female, age 85, both hemispheres 36.1
2337 Male, age 61, both hemispheres 24.9
Gigantocellular reticular nuclei, medullary
nTPM: 43.1
2462 Male, age 74, both hemispheres 49.0
2022 Male, age 76, right hemisphere 47.5
1876 Female, age 85, both hemispheres 42.7
2387 Female, age 91, both hemispheres 41.1
2314 Male, age 61, both hemispheres 40.4
2310 Male, age 80, both hemispheres 37.7
Gigantocellular reticular nuclei, pars
nTPM: 43.6
2168 Male, age 76, both hemispheres 57.9
2336 Male, age 61, both hemispheres 45.0
2084 Female, age 85, both hemispheres 41.2
2706 Male, age 80, both hemispheres 39.4
2330 Male, age 80, both hemispheres 34.8
Inferior olive
nTPM: 41.3
2563 Male, age 74, both hemispheres 47.7
2085 Female, age 85, both hemispheres 43.0
2628 Female, age 91, both hemispheres 41.7
2178 Male, age 61, both hemispheres 38.5
2379 Male, age 80, both hemispheres 35.8
Kolliker-Fuse nucleus
nTPM: 38.7
2793 Female, age 91, left hemisphere 42.0
2163 Male, age 80, both hemispheres 39.8
2315 Male, age 76, right hemisphere 34.3
Lateral lemniscal nuclei
nTPM: 48.4
2169 Male, age 76, both hemispheres 58.5
2746 Female, age 85, left hemisphere 49.7
2453 Male, age 74, right hemisphere 49.2
2036 Male, age 80, both hemispheres 44.9
2320 Female, age 91, left hemisphere 39.8
Lateral medullary reticular nucleus
nTPM: 40.0
2305 Male, age 74, both hemispheres 44.8
2804 Female, age 91, both hemispheres 43.7
2374 Male, age 61, both hemispheres 38.4
2044 Male, age 76, both hemispheres 38.1
2190 Female, age 85, both hemispheres 37.9
2852 Male, age 80, both hemispheres 37.3
Lateral parabrachial nucleus
nTPM: 39.5
2139 Female, age 85, right hemisphere 53.5
2013 Male, age 80, both hemispheres 41.5
2790 Male, age 61, both hemispheres 32.2
2792 Male, age 76, both hemispheres 30.7
Lateral vestibular nucleus
nTPM: 37.4
2184 Male, age 76, both hemispheres 39.0
2311 Male, age 80, both hemispheres 35.7
Locus coeruleus
nTPM: 40.9
2014 Male, age 55, unknown 43.2
2788 Male, age 74, unknown 42.9
2720 Male, age 74, both hemispheres 42.0
2317 Female, age 72, unknown 41.2
2123 Female, age 91, both hemispheres 41.0
2162 Male, age 80, both hemispheres 38.4
1980 Male, age 76, both hemispheres 37.5
Medial olivary nucleus
nTPM: 34.2
1943 Male, age 61, both hemispheres 38.5
2138 Female, age 91, both hemispheres 37.0
2851 Male, age 80, both hemispheres 31.6
1962 Male, age 76, both hemispheres 29.7
Medial parabrachial nucleus
nTPM: 36.6
2463 Female, age 85, right hemisphere 37.5
2156 Male, age 61, both hemispheres 36.9
2786 Male, age 76, both hemispheres 36.9
2854 Male, age 80, both hemispheres 36.4
2170 Female, age 91, both hemispheres 35.2
Medial periolivary nuclei
nTPM: 45.4
2063 Male, age 76, both hemispheres 55.4
2171 Female, age 85, both hemispheres 49.6
2791 Male, age 74, right hemisphere 45.7
2458 Female, age 91, both hemispheres 40.0
2081 Male, age 80, both hemispheres 36.4
Medial vestibular nucleus
nTPM: 40.5
2093 Male, age 80, both hemispheres 44.7
2803 Female, age 91, both hemispheres 44.7
2801 Male, age 74, both hemispheres 43.3
2134 Male, age 76, both hemispheres 38.5
2743 Female, age 85, both hemispheres 38.4
2624 Male, age 61, both hemispheres 33.5
Motor facial nucleus
nTPM: 46.6
2062 Male, age 76, both hemispheres 61.2
2365 Male, age 74, right hemisphere 46.5
2795 Female, age 91, both hemispheres 45.5
2697 Female, age 85, both hemispheres 45.1
2327 Male, age 80, both hemispheres 41.2
2126 Male, age 61, both hemispheres 39.9
Motor hypoglossal nucleus
nTPM: 41.0
2132 Female, age 85, both hemispheres 50.2
2125 Female, age 91, both hemispheres 46.7
2277 Male, age 76, both hemispheres 40.3
2461 Male, age 61, both hemispheres 34.7
2182 Male, age 80, both hemispheres 33.2
Motor trigeminal nucleus
nTPM: 41.0
2560 Male, age 74, both hemispheres 45.0
2309 Male, age 76, both hemispheres 42.9
2321 Female, age 91, both hemispheres 41.0
2079 Male, age 80, both hemispheres 39.4
2335 Male, age 61, both hemispheres 36.5
Nuclei of the trapezoid body
nTPM: 51.5
1983 Male, age 76, both hemispheres 59.6
2159 Male, age 61, both hemispheres 55.2
2735 Female, age 85, both hemispheres 53.9
2166 Male, age 80, both hemispheres 45.2
2368 Female, age 91, both hemispheres 43.7
Nucleus ambiguus
nTPM: 39.8
2096 Female, age 85, both hemispheres 42.4
2071 Male, age 76, both hemispheres 37.2
Nucleus cuneatus
nTPM: 38.6
2564 Male, age 74, both hemispheres 43.6
2805 Female, age 91, both hemispheres 43.5
2131 Male, age 76, both hemispheres 41.1
2562 Male, age 61, both hemispheres 40.9
2381 Male, age 80, both hemispheres 39.6
2100 Male, age 76, both hemispheres 38.3
2380 Male, age 80, both hemispheres 34.9
2376 Male, age 61, both hemispheres 33.8
2808 Female, age 85, both hemispheres 32.1
Nucleus gracilis
nTPM: 38.4
2627 Male, age 74, both hemispheres 42.8
2382 Male, age 80, both hemispheres 37.4
2299 Female, age 85, both hemispheres 35.1
Nucleus raphe magnus
nTPM: 47.2
2160 Male, age 61, both hemispheres 50.8
2455 Male, age 74, both hemispheres 50.1
2172 Female, age 85, both hemispheres 48.5
2051 Male, age 76, both hemispheres 45.7
2328 Male, age 80, both hemispheres 45.1
2459 Female, age 91, both hemispheres 43.3
Nucleus raphe obscurus
nTPM: 34.5
2800 Male, age 61, midline 39.2
2845 Female, age 85, midline 39.0
2142 Male, age 76, midline 25.4
Nucleus raphe pallidus
nTPM: 32.5
1924 Male, age 61, midline 36.8
2183 Male, age 80, midline 33.9
2145 Male, age 76, midline 27.0
Nucleus tractus solitarii
nTPM: 38.6
2144 Female, age 91, right hemisphere 42.7
2656 Male, age 76, both hemispheres 42.7
2191 Female, age 85, both hemispheres 36.3
2307 Male, age 80, both hemispheres 32.7
Paramedian reticular nucleus
nTPM: 41.4
2313 Male, age 61, both hemispheres 45.8
2050 Female, age 85, both hemispheres 43.9
2057 Male, age 80, both hemispheres 39.5
2052 Male, age 76, both hemispheres 36.4
Parvicellular reticular nuclei
nTPM: 39.8
2558 Male, age 74, both hemispheres 48.7
2095 Male, age 76, both hemispheres 38.2
2119 Male, age 80, both hemispheres 32.5
Parvicellular reticular nuclei, medullary
nTPM: 44.1
2181 Male, age 80, left hemisphere 45.5
2091 Female, age 85, both hemispheres 44.4
2189 Female, age 91, both hemispheres 42.4
Pedunculopontine tegmental nucleus
nTPM: 36.2
1921 Female, age 85, both hemispheres 40.7
2334 Male, age 80, both hemispheres 37.6
2338 Male, age 61, both hemispheres 30.4
Peritrigeminal nucleus
nTPM: 38.1
2179 Male, age 61, both hemispheres 40.8
2067 Female, age 85, both hemispheres 38.9
2136 Male, age 76, both hemispheres 34.6
Pontine nuclei
nTPM: 50.3
2787 Female, age 85, both hemispheres 57.4
2109 Female, age 72, unknown 56.4
1968 Male, age 76, left hemisphere 55.0
2727 Male, age 61, right hemisphere 54.9
1863 Male, age 55, unknown 54.0
2454 Male, age 74, left hemisphere 47.4
2115 Male, age 80, left hemisphere 38.6
2319 Female, age 91, both hemispheres 38.5
Pontine raphe nucleus
nTPM: 42.2
2122 Female, age 85, midline 43.6
2853 Male, age 76, midline 40.7
Posteroventral cochlear nucleus
nTPM: 37.6
2752 Female, age 85, both hemispheres 44.6
2070 Male, age 76, both hemispheres 42.6
2135 Female, age 91, both hemispheres 35.8
2371 Male, age 61, both hemispheres 33.3
2341 Male, age 80, both hemispheres 31.6
Prepositus hypoglossal nucleus
nTPM: 35.7
2855 Female, age 85, right hemisphere 37.6
2086 Male, age 80, both hemispheres 33.8
Principal sensory trigeminal nucleus
nTPM: 45.3
2158 Male, age 61, both hemispheres 52.3
2008 Male, age 80, left hemisphere 48.2
2367 Female, age 91, left hemisphere 42.7
2324 Male, age 76, both hemispheres 37.9
Reticular pontine nucleus, caudal
nTPM: 45.0
2092 Male, age 76, both hemispheres 51.7
2559 Male, age 74, both hemispheres 43.6
2457 Female, age 91, both hemispheres 43.0
2332 Male, age 80, right hemisphere 41.8
Reticular pontine nucleus, oral
nTPM: 40.6
2012 Female, age 85, both hemispheres 46.4
2361 Male, age 74, both hemispheres 41.3
2366 Female, age 91, both hemispheres 40.7
1939 Male, age 80, both hemispheres 38.2
2167 Male, age 76, both hemispheres 36.3
Reticulotegmental nucleus
nTPM: 38.7
2325 Male, age 76, both hemispheres 44.9
2452 Male, age 74, both hemispheres 39.8
2322 Female, age 91, both hemispheres 37.0
2333 Male, age 80, both hemispheres 33.3
Spinal trigeminal nucleus, caudal
nTPM: 43.0
2390 Female, age 91, both hemispheres 47.4
2447 Male, age 76, both hemispheres 42.2
2642 Male, age 74, both hemispheres 42.2
2312 Male, age 61, both hemispheres 41.7
2308 Male, age 80, both hemispheres 41.4
Spinal trigeminal nucleus, interpolar
nTPM: 41.0
2386 Female, age 85, both hemispheres 44.5
2389 Female, age 91, both hemispheres 42.3
2625 Male, age 61, both hemispheres 42.3
2033 Male, age 80, both hemispheres 41.4
2066 Male, age 76, right hemisphere 34.5
Spinal trigeminal nucleus, oral
nTPM: 39.5
1978 Male, age 76, both hemispheres 43.3
2737 Female, age 85, both hemispheres 42.1
2164 Male, age 80, both hemispheres 33.2
Spinal vestibular nucleus
nTPM: 45.1
2384 Male, age 74, both hemispheres 49.9
2186 Female, age 91, both hemispheres 46.0
2748 Male, age 76, both hemispheres 45.5
2806 Female, age 85, both hemispheres 45.2
2780 Male, age 80, both hemispheres 44.4
2796 Male, age 61, both hemispheres 39.6
Subcoeruleus area
nTPM: 42.5
1958 Male, age 80, both hemispheres 48.0
2089 Male, age 76, left hemisphere 44.9
2451 Male, age 74, both hemispheres 44.0
2323 Female, age 91, left hemisphere 40.3
2369 Female, age 85, left hemisphere 35.1
Superior olive
nTPM: 48.5
1875 Female, age 85, both hemispheres 58.5
2020 Male, age 76, both hemispheres 54.0
2329 Male, age 80, right hemisphere 45.3
2561 Female, age 91, both hemispheres 42.4
2364 Male, age 74, right hemisphere 42.3
Superior vestibular nucleus
nTPM: 38.8
2383 Male, age 74, both hemispheres 41.7
2015 Male, age 80, both hemispheres 39.3
2061 Male, age 76, both hemispheres 35.5
Ventral medullary reticular nucleus
nTPM: 43.1
2060 Male, age 76, both hemispheres 45.5
2372 Male, age 61, both hemispheres 40.8
Ventral periolivary nuclei
nTPM: 46.5
2023 Male, age 76, both hemispheres 51.2
2165 Male, age 80, both hemispheres 49.4
2794 Female, age 91, left hemisphere 43.6
2130 Female, age 85, both hemispheres 42.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 37.8
2741 Female, age 85, both hemispheres 40.4
2180 Male, age 61, both hemispheres 39.7
2302 Female, age 91, both hemispheres 37.8
1986 Male, age 76, both hemispheres 36.0
2118 Male, age 80, both hemispheres 35.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 41.1
1959 Male, age 76, both hemispheres 50.9
2449 Male, age 74, both hemispheres 46.9
2456 Female, age 91, both hemispheres 40.0
2161 Male, age 80, both hemispheres 39.5
2840 Female, age 85, both hemispheres 38.0
2359 Male, age 61, both hemispheres 31.1

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 29.0
FF:10182-103D2 60 years, female 31.0
FF:10165-103B3 76 years, female 27.1
Medulla oblongata
Scaled Tags Per Million: 23.7
FF:10174-103C3 60 years, female 25.8
FF:10155-103A2 76 years, female 23.1
FF:10038-101F2 18-64 years, mixed 22.1
Pons
Scaled Tags Per Million: 42.6
FF:10033-101E6 18-54 years, mixed 42.6

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 49.5
Pig sample Sample description nTPM
41.143.046.236.043.20510152025303540455055
 		Medulla oblongata
nTPM: 44.3
Samples: 4

Max nTPM: 55.2
Min nTPM: 36.0
Sample A Female 55.2
Sample B Female 43.2
Sample C Male 42.8
Sample D Male 36.0
47.248.450.646.155.20510152025303540455055
 		Pons
nTPM: 49.5
Samples: 4

Max nTPM: 55.2
Min nTPM: 46.1
Sample A Female 47.6
Sample B Female 49.1
Sample C Male 55.2
Sample D Male 46.1

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
21.322.122.619.823.30246810121416182022
 		Pons and medulla
nTPM: 21.8
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.8
Sample A Male 22.3
Sample B Male 23.3
Sample C Female 19.8
Sample D Female 21.8

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.9
68797721 Antisense, RP_050215_01_A05, Mouse strain C57BL/6J (56 days, male) 5.3
71064176 Antisense, RP_050725_03_D03, Mouse strain C57BL/6J (56 days, male) 4.5
Pons
Expression energy: 4.2
68797721 Antisense, RP_050215_01_A05, Mouse strain C57BL/6J (56 days, male) 4.8
71064176 Antisense, RP_050725_03_D03, Mouse strain C57BL/6J (56 days, male) 3.7

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