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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
98.2
nTPM
Monaco:
32.6
nTPM
Schmiedel:
27.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
98.2
HPA sample
nTPM
gdT-cell nTPM: 98.2
Samples: 6
Max nTPM: 115.9
Min nTPM: 84.7
P10809_1007
88.9
P10809_1022
115.9
P10809_1041
96.8
P10809_1060
84.7
P10809_1077
99.9
P10809_1098
102.8
MAIT T-cell nTPM: 54.7
Samples: 6
Max nTPM: 67.6
Min nTPM: 33.8
P10809_1006
33.8
P10809_1024
52.2
P10809_1043
54.1
P10809_1062
67.6
P10809_1083
61.9
P10809_1097
58.7
Memory CD4 T-cell nTPM: 73.0
Samples: 6
Max nTPM: 94.8
Min nTPM: 46.3
P10809_1014
46.3
P10809_1026
75.8
P10809_1045
67.3
P10809_1064
94.8
P10809_1086
82.7
P10809_1113
71.0
Memory CD8 T-cell nTPM: 92.8
Samples: 5
Max nTPM: 109.0
Min nTPM: 68.3
P10809_1012
68.3
P10809_1027
106.6
P10809_1046
92.2
P10809_1065
88.1
P10809_1111
109.0
Naive CD4 T-cell nTPM: 44.2
Samples: 6
Max nTPM: 60.0
Min nTPM: 27.1
P10809_1015
27.1
P10809_1030
43.7
P10809_1049
60.0
P10809_1068
39.0
P10809_1085
52.7
P10809_1112
42.5
Naive CD8 T-cell nTPM: 65.3
Samples: 6
Max nTPM: 88.8
Min nTPM: 38.3
P10809_1016
38.3
P10809_1031
55.7
P10809_1050
71.8
P10809_1069
82.8
P10809_1087
88.8
P10809_1110
54.3
T-reg nTPM: 71.0
Samples: 6
Max nTPM: 84.4
Min nTPM: 52.0
P10809_1018
69.3
P10809_1037
74.9
P10809_1056
84.4
P10809_1075
71.8
P10809_1094
52.0
P10809_1106
73.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
32.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 15.2
Samples: 4
Max nTPM: 20.5
Min nTPM: 7.5
RHH5202_R3573
7.5
RHH5230_R3602
17.7
RHH5259_R3631
20.5
RHH5288_R3660
15.1
Effector memory CD8 T-cell nTPM: 15.1
Samples: 4
Max nTPM: 20.3
Min nTPM: 12.0
RHH5203_R3574
15.3
RHH5231_R3603
12.0
RHH5260_R3632
20.3
RHH5289_R3661
12.9
MAIT T-cell nTPM: 10.7
Samples: 4
Max nTPM: 14.3
Min nTPM: 7.8
RHH5233_R3605
8.2
RHH5205_R3576
12.3
RHH5262_R3634
7.8
RHH5297_R3663
14.3
Memory CD4 T-cell TFH nTPM: 12.4
Samples: 4
Max nTPM: 23.0
Min nTPM: 7.1
RHH5300_R3666
9.7
RHH5236_R3608
23.0
RHH5265_R3637
9.9
RHH5208_R3579
7.1
Memory CD4 T-cell Th1 nTPM: 15.7
Samples: 4
Max nTPM: 25.0
Min nTPM: 6.9
RHH5210_R3581
6.9
RHH5302_R3668
25.0
RHH5238_R3610
13.9
RHH5267_R3639
16.9
Memory CD4 T-cell Th1/Th17 nTPM: 17.6
Samples: 4
Max nTPM: 26.8
Min nTPM: 12.3
RHH5303_R3669
26.8
RHH5211_R3582
12.3
RHH5239_R3611
12.6
RHH5268_R3640
18.6
Memory CD4 T-cell Th17 nTPM: 14.8
Samples: 4
Max nTPM: 20.7
Min nTPM: 12.0
RHH5304_R3670
12.9
RHH5212_R3583
20.7
RHH5240_R3612
13.5
RHH5269_R3641
12.0
Memory CD4 T-cell Th2 nTPM: 18.5
Samples: 4
Max nTPM: 28.3
Min nTPM: 10.2
RHH5305_R3671
28.3
RHH5213_R3584
19.6
RHH5241_R3613
10.2
RHH5270_R3642
15.9
Naive CD4 T-cell nTPM: 14.1
Samples: 4
Max nTPM: 20.1
Min nTPM: 6.5
RHH5306_R3672
20.1
RHH5214_R3585
17.0
RHH5242_R3614
6.5
RHH5271_R3643
12.9
Naive CD8 T-cell nTPM: 11.2
Samples: 4
Max nTPM: 20.1
Min nTPM: 3.7
RHH5201_R3572
3.7
RHH5229_R3601
20.1
RHH5258_R3630
10.8
RHH5287_R3659
10.2
Non-Vd2 gdTCR nTPM: 22.5
Samples: 4
Max nTPM: 36.4
Min nTPM: 14.8
RHH5235_R3607
17.3
RHH5264_R3636
21.3
RHH5207_R3578
14.8
RHH5299_R3665
36.4
T-reg nTPM: 15.0
Samples: 4
Max nTPM: 19.5
Min nTPM: 12.8
RHH5301_R3667
14.3
RHH5237_R3609
19.5
RHH5266_R3638
13.4
RHH5209_R3580
12.8
Terminal effector memory CD4 T-cell nTPM: 16.0
Samples: 2
Max nTPM: 16.3
Min nTPM: 15.6
RHH5243_R3615
15.6
RHH5272_R3644
16.3
Terminal effector memory CD8 T-cell nTPM: 32.2
Samples: 4
Max nTPM: 61.2
Min nTPM: 15.7
RHH5232_R3604
15.7
RHH5204_R3575
61.2
RHH5261_R3633
24.9
RHH5296_R3662
26.9
Vd2 gdTCR nTPM: 32.6
Samples: 4
Max nTPM: 46.1
Min nTPM: 15.6
RHH5234_R3606
15.6
RHH5206_R3577
46.1
RHH5263_R3635
22.7
RHH5298_R3664
46.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
