MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA Brain:24.1 nTPM
GTEx:16.8 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:40.7 nTPM
Mouse:26.7 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2019 Male, age 18, unknown 25.2
2586 Male, age 75, left hemisphere 25.0
1870 Female, age 42, unknown 24.5
2411 Female, age 72, unknown 24.4
1827 Male, age 72, unknown 23.1
2666 Male, age 74, left hemisphere 22.6
1830 Male, age 51, unknown 21.6
2219 Male, age 76, both hemispheres 21.2
2828 Female, age 72, unknown 21.2
1833 Male, age 53, unknown 20.0
Dorsal raphe nucleus
nTPM: 21.6
2298 Female, age 72, unknown 25.5
1828 Male, age 53, unknown 21.8
2047 Male, age 72, unknown 20.8
2750 Male, age 76, both hemispheres 20.2
2016 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 24.6
2849 Male, age 72, unknown 23.7
1848 Female, age 42, unknown 22.9
1890 Male, age 53, unknown 20.9
Median raphe nucleus
nTPM: 21.2
2220 Male, age 76, midline 21.2
Periaquaductal grey, anterior
nTPM: 24.1
2502 Female, age 75, unknown 24.6
1947 Male, age 18, unknown 24.5
1795 Male, age 51, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 22.0
1840 Male, age 53, unknown 24.7
2464 Female, age 72, unknown 22.3
2850 Male, age 76, both hemispheres 21.7
1831 Male, age 72, unknown 19.1
Periaquaductal grey, lateral
nTPM: 22.7
2272 Male, age 74, both hemispheres 25.6
2053 Male, age 18, unknown 21.3
2140 Male, age 76, both hemispheres 21.2
Pretectal area
nTPM: 23.9
1817 Female, age 42, unknown 27.9
1816 Male, age 51, unknown 26.4
2007 Male, age 72, unknown 25.6
2273 Male, age 74, both hemispheres 24.9
1944 Female, age 72, unknown 24.5
2825 Male, age 18, unknown 23.0
2224 Female, age 72, unknown 22.7
1815 Male, age 53, unknown 22.6
2407 Male, age 75, both hemispheres 22.0
2667 Female, age 75, unknown 21.9
2316 Male, age 76, right hemisphere 21.6
Red nucleus
nTPM: 22.4
2785 Male, age 18, unknown 25.6
2584 Male, age 75, left hemisphere 24.7
2503 Female, age 72, unknown 24.2
1821 Female, age 72, unknown 22.5
2588 Male, age 74, left hemisphere 22.5
2769 Male, age 72, unknown 22.3
1904 Male, age 53, unknown 22.0
2725 Female, age 75, unknown 21.9
2227 Male, age 72, unknown 21.7
1865 Male, age 51, unknown 21.4
2823 Male, age 76, right hemisphere 20.6
1954 Female, age 42, unknown 19.8
Substantia nigra
nTPM: 23.5
1941 Male, age 53, unknown 25.9
1916 Female, age 42, unknown 25.2
2583 Male, age 75, right hemisphere 25.1
2590 Female, age 75, unknown 24.5
2241 Male, age 72, unknown 24.1
1889 Female, age 72, unknown 23.2
2409 Female, age 72, unknown 23.1
1851 Male, age 51, unknown 22.7
2665 Male, age 74, both hemispheres 21.5
2699 Male, age 18, unknown 19.1
Superior colliculus
nTPM: 22.3
1796 Male, age 53, unknown 24.0
1995 Male, age 72, unknown 23.6
2261 Male, age 18, unknown 23.2
2668 Female, age 75, unknown 23.2
2087 Female, age 72, unknown 23.1
1895 Male, age 76, right hemisphere 22.7
2664 Male, age 75, both hemispheres 21.6
1913 Female, age 42, unknown 21.5
1839 Male, age 51, unknown 20.9
2587 Male, age 74, left hemisphere 19.1
Ventral tegmental area
nTPM: 22.1
1942 Male, age 51, unknown 24.9
2410 Female, age 72, unknown 22.2
1915 Female, age 42, unknown 21.5
2021 Male, age 53, unknown 21.5
2223 Female, age 72, unknown 21.5
2218 Male, age 76, both hemispheres 20.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.8
Samples: 139

Max nTPM: 35.2
Min nTPM: 10.5
Std nTPM: 3.4
Median nTPM: 16.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 25.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 22.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 22.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 22.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 21.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 21.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 42.9
Min nTPM: 35.0
Sample A Female 42.9
Sample B Female 36.0
Sample C Male 38.3
Sample D Male 35.0
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 47.6
Min nTPM: 37.9
Sample A Female 47.6
Sample B Female 37.9
Sample C Male 39.1
Sample D Male 38.2
Periaqueductal gray
nTPM: 36.4
Samples: 3

Max nTPM: 40.0
Min nTPM: 34.1
Sample B Female 35.0
Sample C Male 40.0
Sample D Male 34.1
Superior colliculi
nTPM: 39.2
Samples: 4

Max nTPM: 43.6
Min nTPM: 31.7
Sample A Female 43.6
Sample B Female 31.7
Sample C Male 39.4
Sample D Male 42.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 28.0
Min nTPM: 25.5
Sample A Male 28.0
Sample B Male 26.8
Sample C Female 25.5
Sample D Female 26.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
77454705 Antisense, RP_070129_01_D01, Mouse strain C57BL/6J (56 days, male) 3.8

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