MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:21.6 nTPM
GTEx:20.0 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:33.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.8
2411 Female, age 72, unknown 23.1
2666 Male, age 74, left hemisphere 21.7
2828 Female, age 72, unknown 21.7
1827 Male, age 72, unknown 20.3
1870 Female, age 42, unknown 20.1
2019 Male, age 18, unknown 19.9
1833 Male, age 53, unknown 18.4
1830 Male, age 51, unknown 18.3
2586 Male, age 75, left hemisphere 17.7
2219 Male, age 76, both hemispheres 16.8
Dorsal raphe nucleus
nTPM: 20.5
2298 Female, age 72, unknown 22.2
2750 Male, age 76, both hemispheres 21.2
2047 Male, age 72, unknown 20.4
1828 Male, age 53, unknown 19.7
2016 Female, age 72, unknown 19.1
Inferior colliculus
nTPM: 18.2
2097 Female, age 72, unknown 18.6
1848 Female, age 42, unknown 18.3
1890 Male, age 53, unknown 18.2
2849 Male, age 72, unknown 17.7
Median raphe nucleus
nTPM: 19.0
2220 Male, age 76, midline 19.0
Periaquaductal grey, anterior
nTPM: 19.2
1947 Male, age 18, unknown 20.4
1795 Male, age 51, unknown 19.7
2502 Female, age 75, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 19.1
2850 Male, age 76, both hemispheres 20.9
1840 Male, age 53, unknown 19.3
1831 Male, age 72, unknown 19.2
2464 Female, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 18.7
2140 Male, age 76, both hemispheres 19.3
2053 Male, age 18, unknown 18.4
2272 Male, age 74, both hemispheres 18.4
Pretectal area
nTPM: 20.2
2273 Male, age 74, both hemispheres 21.2
2667 Female, age 75, unknown 21.2
2224 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.8
1944 Female, age 72, unknown 20.5
2007 Male, age 72, unknown 20.4
2825 Male, age 18, unknown 20.1
1815 Male, age 53, unknown 19.6
1817 Female, age 42, unknown 19.4
2316 Male, age 76, right hemisphere 19.4
2407 Male, age 75, both hemispheres 18.5
Red nucleus
nTPM: 19.7
1954 Female, age 42, unknown 21.5
2725 Female, age 75, unknown 21.4
1821 Female, age 72, unknown 20.5
2588 Male, age 74, left hemisphere 20.5
2785 Male, age 18, unknown 20.4
2769 Male, age 72, unknown 20.1
2823 Male, age 76, right hemisphere 19.3
1865 Male, age 51, unknown 19.2
2227 Male, age 72, unknown 19.2
1904 Male, age 53, unknown 18.9
2503 Female, age 72, unknown 18.1
2584 Male, age 75, left hemisphere 17.6
Substantia nigra
nTPM: 21.6
2409 Female, age 72, unknown 25.8
1916 Female, age 42, unknown 25.2
1851 Male, age 51, unknown 24.1
1941 Male, age 53, unknown 22.5
2583 Male, age 75, right hemisphere 21.8
2241 Male, age 72, unknown 21.2
2699 Male, age 18, unknown 19.9
1889 Female, age 72, unknown 19.6
2590 Female, age 75, unknown 18.5
2665 Male, age 74, both hemispheres 17.4
Superior colliculus
nTPM: 18.1
1796 Male, age 53, unknown 20.8
2668 Female, age 75, unknown 20.1
1839 Male, age 51, unknown 18.3
1995 Male, age 72, unknown 18.2
1913 Female, age 42, unknown 18.1
2261 Male, age 18, unknown 17.9
2587 Male, age 74, left hemisphere 17.7
2087 Female, age 72, unknown 17.6
1895 Male, age 76, right hemisphere 16.6
2664 Male, age 75, both hemispheres 16.0
Ventral tegmental area
nTPM: 20.6
1915 Female, age 42, unknown 22.7
2218 Male, age 76, both hemispheres 22.1
2410 Female, age 72, unknown 21.2
2021 Male, age 53, unknown 20.1
2223 Female, age 72, unknown 18.9
1942 Male, age 51, unknown 18.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 33.3
Min nTPM: 12.3
Std nTPM: 3.4
Median nTPM: 19.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 28.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 28.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 26.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 25.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 25.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.9
Samples: 4

Max nTPM: 29.8
Min nTPM: 19.5
Sample A Female 26.0
Sample B Female 20.1
Sample C Male 29.8
Sample D Male 19.5
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 26.2
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 22.1
Sample C Male 26.2
Sample D Male 22.8
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 25.7
Min nTPM: 21.0
Sample B Female 21.0
Sample C Male 25.7
Sample D Male 21.8
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 27.9
Min nTPM: 20.1
Sample A Female 27.9
Sample B Female 20.1
Sample C Male 22.3
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 36.5
Min nTPM: 31.9
Sample A Male 33.8
Sample B Male 31.9
Sample C Female 36.5
Sample D Female 31.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
80514095 Antisense, RP_080424_02_B03, Mouse strain C57BL/6J (56 days, male) 0.1
71723997 Antisense, RP_050921_01_C10, Mouse strain C57BL/6J (56 days, male) 0.0

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