MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:72.9 nTPM
GTEx:13.0 nTPM
FANTOM5:120.0 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:23.0 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
2411 Female, age 72, unknown 74.0
2019 Male, age 18, unknown 73.7
1830 Male, age 51, unknown 65.0
1833 Male, age 53, unknown 59.6
1870 Female, age 42, unknown 58.4
2828 Female, age 72, unknown 44.5
2586 Male, age 75, left hemisphere 39.6
2666 Male, age 74, left hemisphere 33.9
1827 Male, age 72, unknown 32.7
2219 Male, age 76, both hemispheres 26.8
Dorsal raphe nucleus
nTPM: 33.4
2750 Male, age 76, both hemispheres 60.2
1828 Male, age 53, unknown 34.9
2016 Female, age 72, unknown 33.0
2047 Male, age 72, unknown 20.4
2298 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 27.2
1890 Male, age 53, unknown 32.8
1848 Female, age 42, unknown 29.3
2097 Female, age 72, unknown 23.3
2849 Male, age 72, unknown 23.2
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Periaquaductal grey, anterior
nTPM: 23.1
2502 Female, age 75, unknown 24.9
1947 Male, age 18, unknown 24.7
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 19.6
2464 Female, age 72, unknown 33.0
1831 Male, age 72, unknown 21.6
2850 Male, age 76, both hemispheres 15.3
1840 Male, age 53, unknown 8.4
Periaquaductal grey, lateral
nTPM: 24.4
2272 Male, age 74, both hemispheres 28.6
2053 Male, age 18, unknown 25.6
2140 Male, age 76, both hemispheres 18.8
Pretectal area
nTPM: 27.7
2316 Male, age 76, right hemisphere 46.6
1815 Male, age 53, unknown 39.5
1817 Female, age 42, unknown 32.0
2007 Male, age 72, unknown 31.0
2273 Male, age 74, both hemispheres 30.4
2407 Male, age 75, both hemispheres 29.7
2825 Male, age 18, unknown 28.3
2224 Female, age 72, unknown 21.1
2667 Female, age 75, unknown 18.5
1944 Female, age 72, unknown 14.1
1816 Male, age 51, unknown 13.5
Red nucleus
nTPM: 72.9
1904 Male, age 53, unknown 89.3
1865 Male, age 51, unknown 88.3
2769 Male, age 72, unknown 84.6
1821 Female, age 72, unknown 84.4
2227 Male, age 72, unknown 82.8
2785 Male, age 18, unknown 76.8
2823 Male, age 76, right hemisphere 75.7
1954 Female, age 42, unknown 67.1
2588 Male, age 74, left hemisphere 65.1
2503 Female, age 72, unknown 64.4
2584 Male, age 75, left hemisphere 54.9
2725 Female, age 75, unknown 42.0
Substantia nigra
nTPM: 35.3
2590 Female, age 75, unknown 64.6
2583 Male, age 75, right hemisphere 46.6
1851 Male, age 51, unknown 46.1
1889 Female, age 72, unknown 35.1
2409 Female, age 72, unknown 32.8
2699 Male, age 18, unknown 29.7
1941 Male, age 53, unknown 28.4
1916 Female, age 42, unknown 26.6
2241 Male, age 72, unknown 24.1
2665 Male, age 74, both hemispheres 19.4
Superior colliculus
nTPM: 37.0
1913 Female, age 42, unknown 59.6
1995 Male, age 72, unknown 58.9
2587 Male, age 74, left hemisphere 43.6
1895 Male, age 76, right hemisphere 41.0
1839 Male, age 51, unknown 39.2
2668 Female, age 75, unknown 38.8
1796 Male, age 53, unknown 31.2
2087 Female, age 72, unknown 20.7
2261 Male, age 18, unknown 18.4
2664 Male, age 75, both hemispheres 18.4
Ventral tegmental area
nTPM: 47.1
2223 Female, age 72, unknown 85.5
2410 Female, age 72, unknown 50.0
2218 Male, age 76, both hemispheres 42.8
1942 Male, age 51, unknown 36.4
2021 Male, age 53, unknown 34.5
1915 Female, age 42, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 57.0
Min nTPM: 2.6
Std nTPM: 9.5
Median nTPM: 10.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 57.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 45.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 43.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 43.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 35.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 32.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 32.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 31.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 30.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.0
FF:10158-103A5 76 years, female 120.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.8
Samples: 4

Max nTPM: 37.2
Min nTPM: 13.4
Sample A Female 25.2
Sample B Female 13.4
Sample C Male 19.4
Sample D Male 37.2
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 70.3
Min nTPM: 10.5
Sample A Female 70.3
Sample B Female 20.2
Sample C Male 11.1
Sample D Male 10.5
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 17.8
Min nTPM: 9.0
Sample B Female 17.8
Sample C Male 9.0
Sample D Male 11.5
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 19.8
Min nTPM: 7.7
Sample A Female 19.8
Sample B Female 7.7
Sample C Male 16.9
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 25.8
Min nTPM: 21.2
Sample A Male 22.0
Sample B Male 21.2
Sample C Female 23.2
Sample D Female 25.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
81600096 Antisense, RP_080110_01_F05, Mouse strain C57BL/6J (56 days, male) 5.0
71836845 Antisense, RP_051017_02_C08, Mouse strain C57BL/6J (56 days, male) 1.6
68158080 Antisense, RP_041116_02_G11, Mouse strain C57BL/6J (56 days, male) 0.8

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