MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.1 nTPM
HPA Brain:46.5 nTPM
GTEx:29.1 nTPM
FANTOM5:180.2 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:2.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.6
1870 Female, age 42, unknown 41.7
2411 Female, age 72, unknown 38.0
1830 Male, age 51, unknown 37.0
2019 Male, age 18, unknown 36.7
1833 Male, age 53, unknown 35.7
2828 Female, age 72, unknown 34.9
2666 Male, age 74, left hemisphere 24.9
2586 Male, age 75, left hemisphere 23.0
1827 Male, age 72, unknown 18.2
2219 Male, age 76, both hemispheres 15.6
Dorsal raphe nucleus
nTPM: 23.1
2750 Male, age 76, both hemispheres 58.4
1828 Male, age 53, unknown 21.1
2016 Female, age 72, unknown 17.1
2047 Male, age 72, unknown 9.6
2298 Female, age 72, unknown 9.0
Inferior colliculus
nTPM: 17.4
1890 Male, age 53, unknown 23.2
1848 Female, age 42, unknown 17.0
2097 Female, age 72, unknown 15.4
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 21.9
2220 Male, age 76, midline 21.9
Periaquaductal grey, anterior
nTPM: 13.8
1947 Male, age 18, unknown 15.7
2502 Female, age 75, unknown 15.0
1795 Male, age 51, unknown 10.7
Periaquaductal grey, dorsal
nTPM: 10.5
2464 Female, age 72, unknown 19.6
1831 Male, age 72, unknown 15.5
1840 Male, age 53, unknown 3.8
2850 Male, age 76, both hemispheres 3.1
Periaquaductal grey, lateral
nTPM: 12.9
2272 Male, age 74, both hemispheres 18.3
2053 Male, age 18, unknown 17.2
2140 Male, age 76, both hemispheres 3.2
Pretectal area
nTPM: 16.1
2407 Male, age 75, both hemispheres 25.9
1815 Male, age 53, unknown 23.5
2316 Male, age 76, right hemisphere 19.9
2007 Male, age 72, unknown 18.2
1817 Female, age 42, unknown 15.4
2273 Male, age 74, both hemispheres 14.9
2825 Male, age 18, unknown 14.7
2224 Female, age 72, unknown 13.4
2667 Female, age 75, unknown 12.7
1944 Female, age 72, unknown 11.2
1816 Male, age 51, unknown 7.5
Red nucleus
nTPM: 46.5
2823 Male, age 76, right hemisphere 69.2
1865 Male, age 51, unknown 58.2
1821 Female, age 72, unknown 56.6
1904 Male, age 53, unknown 49.9
2769 Male, age 72, unknown 47.0
2227 Male, age 72, unknown 46.9
2503 Female, age 72, unknown 46.6
2725 Female, age 75, unknown 46.0
2588 Male, age 74, left hemisphere 40.7
1954 Female, age 42, unknown 37.8
2785 Male, age 18, unknown 37.7
2584 Male, age 75, left hemisphere 21.9
Substantia nigra
nTPM: 23.8
2583 Male, age 75, right hemisphere 42.5
2590 Female, age 75, unknown 33.0
1851 Male, age 51, unknown 32.7
2699 Male, age 18, unknown 22.3
1889 Female, age 72, unknown 21.9
2241 Male, age 72, unknown 20.0
2409 Female, age 72, unknown 19.5
1941 Male, age 53, unknown 18.7
1916 Female, age 42, unknown 16.6
2665 Male, age 74, both hemispheres 10.2
Superior colliculus
nTPM: 22.4
1913 Female, age 42, unknown 42.4
1995 Male, age 72, unknown 33.6
2587 Male, age 74, left hemisphere 32.8
1839 Male, age 51, unknown 23.3
1895 Male, age 76, right hemisphere 22.5
1796 Male, age 53, unknown 17.0
2087 Female, age 72, unknown 16.1
2668 Female, age 75, unknown 14.5
2664 Male, age 75, both hemispheres 11.6
2261 Male, age 18, unknown 10.5
Ventral tegmental area
nTPM: 28.1
2223 Female, age 72, unknown 44.3
2410 Female, age 72, unknown 34.1
1942 Male, age 51, unknown 24.3
2218 Male, age 76, both hemispheres 24.0
2021 Male, age 53, unknown 22.5
1915 Female, age 42, unknown 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.1
Samples: 139

Max nTPM: 251.3
Min nTPM: 0.7
Std nTPM: 27.8
Median nTPM: 23.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 251.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 110.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 97.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 91.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 83.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 82.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 79.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 79.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 76.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 74.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 61.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.2
FF:10158-103A5 76 years, female 180.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.6
Samples: 4

Max nTPM: 28.0
Min nTPM: 7.4
Sample A Female 13.2
Sample B Female 7.4
Sample C Male 13.6
Sample D Male 28.0
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 57.1
Min nTPM: 7.4
Sample A Female 57.1
Sample B Female 11.0
Sample C Male 12.1
Sample D Male 7.4
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 9.1
Min nTPM: 7.0
Sample B Female 9.1
Sample C Male 7.0
Sample D Male 8.6
Superior colliculi
nTPM: 13.5
Samples: 4

Max nTPM: 20.0
Min nTPM: 7.2
Sample A Female 13.4
Sample B Female 7.2
Sample C Male 20.0
Sample D Male 13.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.0
Sample A Male 2.5
Sample B Male 2.2
Sample C Female 2.0
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68666613 Antisense, RP_050126_02_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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