MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA Brain:30.7 nTPM
GTEx:26.6 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:31.4 nTPM
Mouse:17.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2586 Male, age 75, left hemisphere 46.5
1870 Female, age 42, unknown 29.7
2666 Male, age 74, left hemisphere 29.4
1830 Male, age 51, unknown 25.4
1833 Male, age 53, unknown 25.3
2828 Female, age 72, unknown 25.3
1827 Male, age 72, unknown 23.9
2019 Male, age 18, unknown 21.7
2411 Female, age 72, unknown 21.5
2219 Male, age 76, both hemispheres 18.7
Dorsal raphe nucleus
nTPM: 26.8
2047 Male, age 72, unknown 31.8
2750 Male, age 76, both hemispheres 27.2
2016 Female, age 72, unknown 26.4
1828 Male, age 53, unknown 24.5
2298 Female, age 72, unknown 24.1
Inferior colliculus
nTPM: 30.7
1848 Female, age 42, unknown 35.0
2849 Male, age 72, unknown 30.7
2097 Female, age 72, unknown 29.3
1890 Male, age 53, unknown 27.9
Median raphe nucleus
nTPM: 25.7
2220 Male, age 76, midline 25.7
Periaquaductal grey, anterior
nTPM: 30.2
1947 Male, age 18, unknown 32.7
1795 Male, age 51, unknown 29.2
2502 Female, age 75, unknown 28.6
Periaquaductal grey, dorsal
nTPM: 26.5
1840 Male, age 53, unknown 30.2
1831 Male, age 72, unknown 27.2
2464 Female, age 72, unknown 24.5
2850 Male, age 76, both hemispheres 24.3
Periaquaductal grey, lateral
nTPM: 27.8
2140 Male, age 76, both hemispheres 29.5
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 26.8
Pretectal area
nTPM: 26.0
2825 Male, age 18, unknown 30.6
2407 Male, age 75, both hemispheres 29.9
2316 Male, age 76, right hemisphere 29.0
1944 Female, age 72, unknown 28.9
2007 Male, age 72, unknown 28.0
2224 Female, age 72, unknown 27.2
1816 Male, age 51, unknown 25.0
1817 Female, age 42, unknown 23.4
2667 Female, age 75, unknown 21.8
2273 Male, age 74, both hemispheres 21.4
1815 Male, age 53, unknown 21.3
Red nucleus
nTPM: 25.3
2584 Male, age 75, left hemisphere 35.9
1954 Female, age 42, unknown 27.1
2725 Female, age 75, unknown 25.7
2503 Female, age 72, unknown 25.3
1904 Male, age 53, unknown 24.8
2769 Male, age 72, unknown 24.7
1865 Male, age 51, unknown 24.6
2588 Male, age 74, left hemisphere 24.5
2785 Male, age 18, unknown 24.3
2227 Male, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 22.4
1821 Female, age 72, unknown 20.7
Substantia nigra
nTPM: 26.8
2583 Male, age 75, right hemisphere 33.9
2665 Male, age 74, both hemispheres 33.5
1916 Female, age 42, unknown 27.9
2590 Female, age 75, unknown 27.9
1941 Male, age 53, unknown 26.8
2241 Male, age 72, unknown 25.2
1889 Female, age 72, unknown 25.1
2699 Male, age 18, unknown 25.1
1851 Male, age 51, unknown 24.7
2409 Female, age 72, unknown 18.2
Superior colliculus
nTPM: 25.7
2664 Male, age 75, both hemispheres 31.1
2668 Female, age 75, unknown 29.3
1839 Male, age 51, unknown 28.8
1796 Male, age 53, unknown 27.2
2261 Male, age 18, unknown 26.3
2587 Male, age 74, left hemisphere 25.7
1995 Male, age 72, unknown 23.8
2087 Female, age 72, unknown 22.2
1895 Male, age 76, right hemisphere 21.5
1913 Female, age 42, unknown 20.8
Ventral tegmental area
nTPM: 26.7
2021 Male, age 53, unknown 32.0
1942 Male, age 51, unknown 27.8
2218 Male, age 76, both hemispheres 27.4
2223 Female, age 72, unknown 26.9
1915 Female, age 42, unknown 25.4
2410 Female, age 72, unknown 20.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 74.3
Min nTPM: 11.6
Std nTPM: 10.5
Median nTPM: 24.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 74.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 61.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 57.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 55.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 49.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 47.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 47.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 46.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 46.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 45.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 27.4
Sample A Female 28.5
Sample B Female 40.8
Sample C Male 27.4
Sample D Male 28.9
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 32.6
Min nTPM: 25.0
Sample A Female 32.6
Sample B Female 27.4
Sample C Male 30.0
Sample D Male 25.0
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 29.6
Min nTPM: 25.5
Sample B Female 25.5
Sample C Male 29.6
Sample D Male 25.6
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 38.3
Min nTPM: 25.1
Sample A Female 27.5
Sample B Female 38.3
Sample C Male 28.2
Sample D Male 25.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 17.8
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 17.8
Sample C Female 17.7
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1461 Antisense, RP_Baylor_102857, Mouse strain C57BL/6J (56 days, male) 0.1
1460 Antisense, RP_Baylor_102857, Mouse strain C57BL/6J (56 days, male) 0.0

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