HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:162.5 nTPM
HPA Brain:135.5 nTPM
GTEx:162.5 nTPM
FANTOM5:233.1 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:68.6 nTPM
Allen mouse:5.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018433Antibody CAB034291
Glial cells HighHigh
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 135.5
Sample id Sample description nTPM
Hippocampus
nTPM: 110.9
2529 Female, age 94, left hemisphere 132.5
1898 Male, age 80, left hemisphere 119.0
1911 Female, age 85, right hemisphere 118.9
2621 Female, age 67, right hemisphere 106.8
1855 Male, age 76, left hemisphere 96.7
2148 Female, age 91, left hemisphere 91.9
Dentate gyrus
nTPM: 101.9
2530 Female, age 94, left hemisphere 129.0
2528 Male, age 74, both hemispheres 117.9
2010 Male, age 76, both hemispheres 116.2
2246 Female, age 85, both hemispheres 94.4
2531 Female, age 67, both hemispheres 77.4
1927 Female, age 91, both hemispheres 76.3
Entorhinal gyrus
nTPM: 105.1
2117 Female, age 91, right hemisphere 167.4
2764 Male, age 80, right hemisphere 128.1
1938 Female, age 85, left hemisphere 103.6
2613 Female, age 94, left hemisphere 81.8
1787 Male, age 76, left hemisphere 81.1
2686 Male, age 75, right hemisphere 68.7
Hippocampus, CA1
nTPM: 100.1
2527 Male, age 74, both hemispheres 127.5
2749 Male, age 80, left hemisphere 106.4
1873 Female, age 85, both hemispheres 98.7
2082 Female, age 91, right hemisphere 98.1
2045 Male, age 76, both hemispheres 70.0
Hippocampus, CA2
nTPM: 112.3
2249 Male, age 74, both hemispheres 168.3
1963 Male, age 80, left hemisphere 126.2
2113 Female, age 91, right hemisphere 106.9
2437 Female, age 94, left hemisphere 100.1
1940 Female, age 85, left hemisphere 99.2
1892 Male, age 76, both hemispheres 73.0
Hippocampus, CA3
nTPM: 111.0
2436 Male, age 74, both hemispheres 223.9
1891 Female, age 85, both hemispheres 135.6
1867 Male, age 76, both hemispheres 102.2
2137 Male, age 80, left hemisphere 78.5
2620 Female, age 94, left hemisphere 77.9
2861 Female, age 67, both hemispheres 48.1
Parahippocampal cortex
nTPM: 94.8
2532 Female, age 72, left hemisphere 115.3
2692 Male, age 74, both hemispheres 115.3
1990 Female, age 91, right hemisphere 110.7
2018 Male, age 76, both hemispheres 102.1
1850 Male, age 80, both hemispheres 99.8
2245 Female, age 91, both hemispheres 97.9
1933 Female, age 85, both hemispheres 97.1
2250 Female, age 67, right hemisphere 80.8
2693 Female, age 94, both hemispheres 73.0
2622 Female, age 67, right hemisphere 56.3
Perirhinal gyrus
nTPM: 75.1
2521 Female, age 94, right hemisphere 85.8
1794 Male, age 80, right hemisphere 81.3
1847 Female, age 91, left hemisphere 80.6
1841 Female, age 85, right hemisphere 65.6
2848 Male, age 76, right hemisphere 62.3
Subiculum
nTPM: 135.5
2042 Male, age 76, both hemispheres 166.4
1901 Male, age 80, both hemispheres 156.5
2438 Female, age 94, left hemisphere 133.9
1977 Female, age 85, both hemispheres 129.4
2619 Male, age 74, both hemispheres 122.6
2729 Female, age 91, right hemisphere 104.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 162.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 162.5
Samples: 197

Max nTPM: 376.5
Min nTPM: 49.5
Std nTPM: 66.1
Median nTPM: 149.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 376.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 366.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 341.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 337.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 333.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 317.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 303.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 302.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 291.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 286.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 281.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 233.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 233.1
FF:10169-103B7 60 years, female 257.5
FF:10153-102I9 76 years, female 208.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1.9
Pig sample Sample description nTPM
Subiculum
nTPM: 21.9
Samples: 4

Max nTPM: 26.6
Min nTPM: 19.0
Sample A Female 26.6
Sample B Female 21.2
Sample C Male 19.0
Sample D Male 20.9
Dorsal hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 41.3
Min nTPM: 22.0
Sample A Female 41.3
Sample B Female 25.0
Sample C Male 28.8
Sample D Male 22.0
Entorhinal cortex
nTPM: 18.9
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.8
Sample A Female 19.4
Sample B Female 20.6
Sample C Male 17.8
Sample D Male 17.8
Ventral hippocampus
nTPM: 24.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 17.0
Sample A Female 28.0
Sample B Female 17.0
Sample C Male 25.3
Sample D Male 28.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 68.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.6
Samples: 4

Max nTPM: 78.6
Min nTPM: 59.8
Sample A Male 61.9
Sample B Male 78.6
Sample C Female 74.1
Sample D Female 59.8
Hippocampal formation
nTPM: 64.0
Samples: 4

Max nTPM: 76.8
Min nTPM: 51.9
Sample A Male 76.8
Sample B Male 58.3
Sample C Female 51.9
Sample D Female 69.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.2
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 5.2
Hippocampal formation
Expression energy: 5.2
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 5.2

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