MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:183.6 nTPM
HPA Brain:178.0 nTPM
GTEx:183.6 nTPM
FANTOM5:579.1 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:71.4 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 178.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.9
1870 Female, age 42, unknown 175.7
2411 Female, age 72, unknown 168.1
1833 Male, age 53, unknown 164.7
1830 Male, age 51, unknown 153.2
2019 Male, age 18, unknown 151.4
2828 Female, age 72, unknown 140.2
1827 Male, age 72, unknown 109.8
2219 Male, age 76, both hemispheres 107.4
2666 Male, age 74, left hemisphere 82.1
2586 Male, age 75, left hemisphere 76.1
Dorsal raphe nucleus
nTPM: 123.1
2750 Male, age 76, both hemispheres 172.3
2016 Female, age 72, unknown 130.6
2298 Female, age 72, unknown 116.0
1828 Male, age 53, unknown 107.9
2047 Male, age 72, unknown 88.5
Inferior colliculus
nTPM: 106.4
1848 Female, age 42, unknown 114.1
2097 Female, age 72, unknown 107.6
2849 Male, age 72, unknown 104.7
1890 Male, age 53, unknown 99.2
Median raphe nucleus
nTPM: 90.4
2220 Male, age 76, midline 90.4
Periaquaductal grey, anterior
nTPM: 90.9
1947 Male, age 18, unknown 97.9
2502 Female, age 75, unknown 89.8
1795 Male, age 51, unknown 85.1
Periaquaductal grey, dorsal
nTPM: 88.4
2464 Female, age 72, unknown 114.0
1831 Male, age 72, unknown 84.8
2850 Male, age 76, both hemispheres 79.8
1840 Male, age 53, unknown 74.7
Periaquaductal grey, lateral
nTPM: 100.4
2272 Male, age 74, both hemispheres 128.2
2053 Male, age 18, unknown 96.5
2140 Male, age 76, both hemispheres 76.6
Pretectal area
nTPM: 114.9
2667 Female, age 75, unknown 160.8
2273 Male, age 74, both hemispheres 138.8
2316 Male, age 76, right hemisphere 130.1
1815 Male, age 53, unknown 129.2
1817 Female, age 42, unknown 118.9
2224 Female, age 72, unknown 114.1
2407 Male, age 75, both hemispheres 112.3
2825 Male, age 18, unknown 103.7
2007 Male, age 72, unknown 100.4
1944 Female, age 72, unknown 83.2
1816 Male, age 51, unknown 71.9
Red nucleus
nTPM: 178.0
1904 Male, age 53, unknown 223.1
2823 Male, age 76, right hemisphere 219.3
1865 Male, age 51, unknown 202.3
1821 Female, age 72, unknown 198.6
1954 Female, age 42, unknown 198.5
2769 Male, age 72, unknown 197.1
2227 Male, age 72, unknown 196.6
2503 Female, age 72, unknown 190.1
2785 Male, age 18, unknown 181.0
2725 Female, age 75, unknown 132.8
2588 Male, age 74, left hemisphere 110.9
2584 Male, age 75, left hemisphere 86.3
Substantia nigra
nTPM: 113.4
1851 Male, age 51, unknown 142.7
2699 Male, age 18, unknown 132.3
2409 Female, age 72, unknown 130.0
1889 Female, age 72, unknown 125.1
2583 Male, age 75, right hemisphere 117.8
2590 Female, age 75, unknown 112.1
1916 Female, age 42, unknown 111.4
2241 Male, age 72, unknown 101.8
1941 Male, age 53, unknown 97.8
2665 Male, age 74, both hemispheres 63.4
Superior colliculus
nTPM: 122.5
1913 Female, age 42, unknown 179.3
1995 Male, age 72, unknown 178.4
1895 Male, age 76, right hemisphere 159.5
2587 Male, age 74, left hemisphere 133.5
1839 Male, age 51, unknown 116.4
1796 Male, age 53, unknown 110.2
2668 Female, age 75, unknown 105.7
2087 Female, age 72, unknown 95.6
2261 Male, age 18, unknown 80.3
2664 Male, age 75, both hemispheres 66.5
Ventral tegmental area
nTPM: 123.8
2410 Female, age 72, unknown 150.0
2223 Female, age 72, unknown 140.8
1915 Female, age 42, unknown 124.4
1942 Male, age 51, unknown 113.1
2218 Male, age 76, both hemispheres 108.1
2021 Male, age 53, unknown 106.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 183.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 183.6
Samples: 139

Max nTPM: 493.0
Min nTPM: 61.7
Std nTPM: 74.4
Median nTPM: 161.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 493.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 443.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 428.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 379.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 360.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 356.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 345.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 342.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 329.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 319.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 308.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 579.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 579.1
FF:10158-103A5 76 years, female 579.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 53.7
Min nTPM: 26.2
Sample A Female 48.3
Sample B Female 26.2
Sample C Male 32.2
Sample D Male 53.7
Midbrain
nTPM: 48.6
Samples: 4

Max nTPM: 94.6
Min nTPM: 29.3
Sample A Female 94.6
Sample B Female 37.2
Sample C Male 29.3
Sample D Male 33.3
Periaqueductal gray
nTPM: 32.8
Samples: 3

Max nTPM: 34.9
Min nTPM: 30.0
Sample B Female 34.9
Sample C Male 30.0
Sample D Male 33.5
Superior colliculi
nTPM: 45.6
Samples: 4

Max nTPM: 54.8
Min nTPM: 41.0
Sample A Female 54.8
Sample B Female 41.0
Sample C Male 44.6
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.4
Samples: 4

Max nTPM: 78.4
Min nTPM: 62.9
Sample A Male 78.4
Sample B Male 71.1
Sample C Female 62.9
Sample D Female 73.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 2.9
Midbrain
Expression energy: 2.9
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 2.9

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