BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.8 nTPM
HPA Brain:38.4 nTPM
GTEx:25.8 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:38.7 nTPM
Allen mouse:1.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.7
2289 Male, age 61, right hemisphere 41.3
1781 Male, age 74, unknown 36.6
2481 Female, age 94, left hemisphere 36.4
2288 Male, age 75, left hemisphere 34.3
1854 Male, age 80, left hemisphere 33.3
2290 Female, age 72, unknown 30.0
2846 Female, age 79, unknown 29.5
1857 Female, age 85, left hemisphere 28.4
Globus pallidus, externus
nTPM: 37.5
2646 Male, age 61, right hemisphere 41.7
2772 Female, age 79, unknown 40.6
2567 Female, age 72, unknown 39.2
2395 Male, age 75, both hemispheres 33.3
1996 Male, age 80, right hemisphere 32.7
Globus pallidus, internus
nTPM: 38.4
2037 Male, age 80, right hemisphere 41.5
2566 Female, age 72, unknown 41.2
2778 Female, age 91, both hemispheres 41.1
2483 Female, age 94, right hemisphere 38.8
2111 Female, age 85, right hemisphere 37.6
1818 Male, age 74, unknown 36.3
2287 Male, age 75, right hemisphere 32.0
Nucleus accumbens
nTPM: 33.3
2391 Female, age 94, left hemisphere 37.9
2732 Male, age 80, right hemisphere 37.8
2286 Male, age 75, left hemisphere 34.9
1783 Male, age 74, unknown 33.7
1806 Female, age 85, left hemisphere 33.6
2698 Female, age 72, unknown 30.2
2824 Male, age 61, right hemisphere 30.1
1856 Female, age 91, right hemisphere 28.4
Nucleus basalis of Meynert
nTPM: 35.5
2569 Male, age 61, both hemispheres 42.0
2484 Female, age 94, left hemisphere 37.4
2821 Male, age 75, both hemispheres 33.0
2393 Male, age 80, right hemisphere 29.6
Nucleus of the diagonal band
nTPM: 33.3
2195 Female, age 85, both hemispheres 37.1
1979 Male, age 74, unknown 34.6
2029 Male, age 61, right hemisphere 32.3
1812 Female, age 91, both hemispheres 32.2
2775 Male, age 80, right hemisphere 30.4
Putamen
nTPM: 34.6
2466 Female, age 79, unknown 37.8
2647 Male, age 75, left hemisphere 36.5
2489 Female, age 72, unknown 35.8
2482 Female, age 94, left hemisphere 35.3
1829 Male, age 74, unknown 34.8
1937 Female, age 91, right hemisphere 33.5
1838 Male, age 80, right hemisphere 28.9
Septal nuclei
nTPM: 34.5
2059 Female, age 85, both hemispheres 37.8
1960 Male, age 74, unknown 37.0
2394 Male, age 61, left hemisphere 35.3
2031 Female, age 72, unknown 34.7
2199 Male, age 80, right hemisphere 33.9
2009 Female, age 91, both hemispheres 32.1
2629 Female, age 94, right hemisphere 31.1
Stria terminalis, bed nucleus
nTPM: 34.5
2201 Male, age 74, unknown 36.5
1974 Female, age 91, both hemispheres 35.1
2486 Female, age 94, both hemispheres 32.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 43.6
Min nTPM: 13.8
Std nTPM: 4.2
Median nTPM: 23.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 43.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 34.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 34.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 34.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 34.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 33.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 33.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 33.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.3
Samples: 246

Max nTPM: 54.7
Min nTPM: 14.8
Std nTPM: 4.7
Median nTPM: 24.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 54.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 43.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 42.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 38.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 36.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 36.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 36.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 35.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 35.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 35.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 35.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 25.8
Samples: 205

Max nTPM: 50.3
Min nTPM: 11.8
Std nTPM: 4.2
Median nTPM: 25.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 50.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 44.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 35.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 35.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 35.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 34.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 33.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 32.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 32.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 32.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 32.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.2
FF:10164-103B2 76 years, female 39.2
Nucleus accumbens
Scaled Tags Per Million: 39.2
FF:10037-101F1 23-56 years, mixed 39.2
Putamen
Scaled Tags Per Million: 37.9
FF:10176-103C5 60 years, female 37.9
Globus pallidus
Scaled Tags Per Million: 49.2
FF:10175-103C4 60 years, female 54.9
FF:10161-103A8 76 years, female 43.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Caudate
nTPM: 9.2
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.0
Sample A Female 8.8
Sample B Female 9.5
Sample C Male 10.4
Sample D Male 8.0
Putamen
nTPM: 9.2
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.6
Sample A Female 9.7
Sample B Female 8.6
Sample C Male 9.8
Sample D Male 8.6
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.4
Sample A Female 10.9
Sample B Female 9.2
Sample C Male 11.3
Sample D Male 8.4
Ventral pallidum
nTPM: 9.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 9.7
Sample C Male 11.0
Sample D Male 8.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 30.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 28.9
Sample A Male 29.9
Sample B Male 33.1
Sample C Female 30.8
Sample D Female 28.9
Septum
nTPM: 38.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 36.2
Sample A Male 36.2
Sample B Male 40.9
Sample C Female 39.6
Sample D Female 38.1
Ventral forebrain
nTPM: 35.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 33.6
Sample A Male 33.7
Sample B Male 35.6
Sample C Female 38.2
Sample D Female 33.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
77620443 Antisense, RP_070129_03_C09, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 1.6
77620443 Antisense, RP_070129_03_C09, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org