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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
361.7
nTPM
Monaco:
62.3
nTPM
Schmiedel:
163.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
361.7
HPA sample
nTPM
gdT-cell nTPM: 361.7
Samples: 6
Max nTPM: 988.2
Min nTPM: 0.0
P10809_1007
571.7
P10809_1022
266.7
P10809_1041
988.2
P10809_1060
132.3
P10809_1077
0.0
P10809_1098
211.2
MAIT T-cell nTPM: 103.5
Samples: 6
Max nTPM: 274.3
Min nTPM: 0.0
P10809_1006
28.2
P10809_1024
196.7
P10809_1043
274.3
P10809_1062
75.6
P10809_1083
0.0
P10809_1097
46.2
Memory CD4 T-cell nTPM: 1.0
Samples: 6
Max nTPM: 3.5
Min nTPM: 0.2
P10809_1014
0.2
P10809_1026
0.2
P10809_1045
3.5
P10809_1064
0.8
P10809_1086
0.5
P10809_1113
0.8
Memory CD8 T-cell nTPM: 67.6
Samples: 5
Max nTPM: 149.2
Min nTPM: 7.2
P10809_1012
17.2
P10809_1027
61.4
P10809_1046
149.2
P10809_1065
102.8
P10809_1111
7.2
Naive CD4 T-cell nTPM: 3.2
Samples: 6
Max nTPM: 7.8
Min nTPM: 0.0
P10809_1015
2.6
P10809_1030
6.0
P10809_1049
7.8
P10809_1068
1.2
P10809_1085
0.0
P10809_1112
1.8
Naive CD8 T-cell nTPM: 153.6
Samples: 6
Max nTPM: 360.9
Min nTPM: 1.6
P10809_1016
123.1
P10809_1031
297.2
P10809_1050
360.9
P10809_1069
65.1
P10809_1087
1.6
P10809_1110
73.5
T-reg nTPM: 0.0
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1018
0.0
P10809_1037
0.1
P10809_1056
0.0
P10809_1075
0.0
P10809_1094
0.0
P10809_1106
0.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
62.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 3.0
Samples: 4
Max nTPM: 5.7
Min nTPM: 1.2
RHH5202_R3573
1.2
RHH5230_R3602
1.9
RHH5259_R3631
3.0
RHH5288_R3660
5.7
Effector memory CD8 T-cell nTPM: 0.5
Samples: 4
Max nTPM: 1.1
Min nTPM: 0.0
RHH5203_R3574
0.3
RHH5231_R3603
1.1
RHH5260_R3632
0.6
RHH5289_R3661
0.0
MAIT T-cell nTPM: 5.5
Samples: 4
Max nTPM: 12.6
Min nTPM: 0.0
RHH5233_R3605
12.6
RHH5205_R3576
0.3
RHH5262_R3634
0.0
RHH5297_R3663
8.9
Memory CD4 T-cell TFH nTPM: 0.3
Samples: 4
Max nTPM: 1.2
Min nTPM: 0.0
RHH5300_R3666
0.0
RHH5236_R3608
1.2
RHH5265_R3637
0.0
RHH5208_R3579
0.0
Memory CD4 T-cell Th1 nTPM: 0.3
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.0
RHH5210_R3581
0.0
RHH5302_R3668
0.0
RHH5238_R3610
0.2
RHH5267_R3639
0.9
Memory CD4 T-cell Th1/Th17 nTPM: 0.4
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.0
RHH5303_R3669
0.0
RHH5211_R3582
0.2
RHH5239_R3611
0.5
RHH5268_R3640
0.9
Memory CD4 T-cell Th17 nTPM: 0.5
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.0
RHH5304_R3670
0.4
RHH5212_R3583
0.5
RHH5240_R3612
0.9
RHH5269_R3641
0.0
Memory CD4 T-cell Th2 nTPM: 0.9
Samples: 4
Max nTPM: 2.2
Min nTPM: 0.0
RHH5305_R3671
1.4
RHH5213_R3584
0.0
RHH5241_R3613
0.0
RHH5270_R3642
2.2
Naive CD4 T-cell nTPM: 1.3
Samples: 4
Max nTPM: 1.5
Min nTPM: 1.0
RHH5306_R3672
1.3
RHH5214_R3585
1.5
RHH5242_R3614
1.0
RHH5271_R3643
1.5
Naive CD8 T-cell nTPM: 62.3
Samples: 4
Max nTPM: 126.1
Min nTPM: 23.9
RHH5201_R3572
23.9
RHH5229_R3601
126.1
RHH5258_R3630
64.9
RHH5287_R3659
34.2
Non-Vd2 gdTCR nTPM: 3.0
Samples: 4
Max nTPM: 8.1
Min nTPM: 0.0
RHH5235_R3607
8.1
RHH5264_R3636
0.0
RHH5207_R3578
1.3
RHH5299_R3665
2.6
T-reg nTPM: 0.2
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5301_R3667
0.4
RHH5237_R3609
0.1
RHH5266_R3638
0.3
RHH5209_R3580
0.0
Terminal effector memory CD4 T-cell nTPM: 0.4
Samples: 2
Max nTPM: 0.8
Min nTPM: 0.0
RHH5243_R3615
0.0
RHH5272_R3644
0.8
Terminal effector memory CD8 T-cell nTPM: 0.8
Samples: 4
Max nTPM: 1.3
Min nTPM: 0.3
RHH5232_R3604
1.2
RHH5204_R3575
0.3
RHH5261_R3633
0.5
RHH5296_R3662
1.3
Vd2 gdTCR nTPM: 38.8
Samples: 4
Max nTPM: 101.9
Min nTPM: 1.5
RHH5234_R3606
48.7
RHH5206_R3577
1.5
RHH5263_R3635
3.1
RHH5298_R3664
101.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
