MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.0 nTPM
HPA Brain:0.7 nTPM
GTEx:0.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:0.4 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.2
2828 Female, age 72, unknown 0.4
1833 Male, age 53, unknown 0.3
1827 Male, age 72, unknown 0.2
1830 Male, age 51, unknown 0.2
1870 Female, age 42, unknown 0.2
2019 Male, age 18, unknown 0.2
2411 Female, age 72, unknown 0.1
2666 Male, age 74, left hemisphere 0.1
2219 Male, age 76, both hemispheres 0.0
2586 Male, age 75, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 0.3
2298 Female, age 72, unknown 0.5
2047 Male, age 72, unknown 0.4
1828 Male, age 53, unknown 0.3
2016 Female, age 72, unknown 0.1
2750 Male, age 76, both hemispheres 0.1
Inferior colliculus
nTPM: 0.2
2849 Male, age 72, unknown 0.3
1890 Male, age 53, unknown 0.2
1848 Female, age 42, unknown 0.1
2097 Female, age 72, unknown 0.1
Median raphe nucleus
nTPM: 0.4
2220 Male, age 76, midline 0.4
Periaquaductal grey, anterior
nTPM: 0.5
1795 Male, age 51, unknown 0.6
1947 Male, age 18, unknown 0.6
2502 Female, age 75, unknown 0.2
Periaquaductal grey, dorsal
nTPM: 0.7
2850 Male, age 76, both hemispheres 1.7
1840 Male, age 53, unknown 0.5
1831 Male, age 72, unknown 0.4
2464 Female, age 72, unknown 0.3
Periaquaductal grey, lateral
nTPM: 0.7
2140 Male, age 76, both hemispheres 1.3
2272 Male, age 74, both hemispheres 0.4
2053 Male, age 18, unknown 0.3
Pretectal area
nTPM: 0.3
2407 Male, age 75, both hemispheres 0.8
2273 Male, age 74, both hemispheres 0.5
2224 Female, age 72, unknown 0.4
2316 Male, age 76, right hemisphere 0.4
2667 Female, age 75, unknown 0.4
1815 Male, age 53, unknown 0.3
2825 Male, age 18, unknown 0.3
1817 Female, age 42, unknown 0.2
1816 Male, age 51, unknown 0.1
1944 Female, age 72, unknown 0.1
2007 Male, age 72, unknown 0.1
Red nucleus
nTPM: 0.2
2725 Female, age 75, unknown 1.0
1904 Male, age 53, unknown 0.3
2588 Male, age 74, left hemisphere 0.3
1821 Female, age 72, unknown 0.2
1865 Male, age 51, unknown 0.2
1954 Female, age 42, unknown 0.2
2227 Male, age 72, unknown 0.2
2769 Male, age 72, unknown 0.2
2785 Male, age 18, unknown 0.1
2823 Male, age 76, right hemisphere 0.1
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
Substantia nigra
nTPM: 0.1
1889 Female, age 72, unknown 0.3
2699 Male, age 18, unknown 0.3
1916 Female, age 42, unknown 0.2
1851 Male, age 51, unknown 0.1
2241 Male, age 72, unknown 0.1
2665 Male, age 74, both hemispheres 0.1
1941 Male, age 53, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 0.3
2664 Male, age 75, both hemispheres 1.0
1995 Male, age 72, unknown 0.5
1839 Male, age 51, unknown 0.4
1895 Male, age 76, right hemisphere 0.4
2261 Male, age 18, unknown 0.3
1796 Male, age 53, unknown 0.2
1913 Female, age 42, unknown 0.2
2087 Female, age 72, unknown 0.2
2587 Male, age 74, left hemisphere 0.2
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 0.2
2021 Male, age 53, unknown 0.3
1942 Male, age 51, unknown 0.2
1915 Female, age 42, unknown 0.1
2218 Male, age 76, both hemispheres 0.1
2223 Female, age 72, unknown 0.1
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.0
Samples: 139

Max nTPM: 0.3
Min nTPM: 0.0
Std nTPM: 0.0
Median nTPM: 0.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 0.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 0.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 0.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 0.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 0.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 0.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 0.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 0.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 0.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 0.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 0.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.5
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.6
Sample C Male 0.1
Sample D Male 0.1
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 1.1
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.2
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.0
Sample A Female 0.8
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org