HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:54.7 nTPM
GTEx:26.2 nTPM
FANTOM5:10.7 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:23.2 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042199Antibody HPA060736
Glial cells Not detectedLow
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.7
Sample id Sample description nTPM
Hippocampus
nTPM: 38.2
2529 Female, age 94, left hemisphere 47.3
2621 Female, age 67, right hemisphere 39.2
2148 Female, age 91, left hemisphere 38.9
1911 Female, age 85, right hemisphere 38.0
1898 Male, age 80, left hemisphere 35.3
1855 Male, age 76, left hemisphere 30.7
Dentate gyrus
nTPM: 40.6
2528 Male, age 74, both hemispheres 52.0
2531 Female, age 67, both hemispheres 48.2
2246 Female, age 85, both hemispheres 43.8
2010 Male, age 76, both hemispheres 37.2
2530 Female, age 94, left hemisphere 32.8
1927 Female, age 91, both hemispheres 29.7
Entorhinal gyrus
nTPM: 54.7
2764 Male, age 80, right hemisphere 67.6
2686 Male, age 75, right hemisphere 57.9
2613 Female, age 94, left hemisphere 57.2
1787 Male, age 76, left hemisphere 52.4
2117 Female, age 91, right hemisphere 48.3
1938 Female, age 85, left hemisphere 44.5
Hippocampus, CA1
nTPM: 35.4
2082 Female, age 91, right hemisphere 48.1
2527 Male, age 74, both hemispheres 40.0
1873 Female, age 85, both hemispheres 34.8
2045 Male, age 76, both hemispheres 32.1
2749 Male, age 80, left hemisphere 22.0
Hippocampus, CA2
nTPM: 39.3
1940 Female, age 85, left hemisphere 48.2
2113 Female, age 91, right hemisphere 44.4
2437 Female, age 94, left hemisphere 44.0
2249 Male, age 74, both hemispheres 35.6
1963 Male, age 80, left hemisphere 32.2
1892 Male, age 76, both hemispheres 31.4
Hippocampus, CA3
nTPM: 39.6
2861 Female, age 67, both hemispheres 53.9
2620 Female, age 94, left hemisphere 44.1
1867 Male, age 76, both hemispheres 43.2
1891 Female, age 85, both hemispheres 38.8
2436 Male, age 74, both hemispheres 31.4
2137 Male, age 80, left hemisphere 25.9
Parahippocampal cortex
nTPM: 51.5
2622 Female, age 67, right hemisphere 71.9
2532 Female, age 72, left hemisphere 56.6
2692 Male, age 74, both hemispheres 53.0
2693 Female, age 94, both hemispheres 53.0
1933 Female, age 85, both hemispheres 48.7
1850 Male, age 80, both hemispheres 48.4
1990 Female, age 91, right hemisphere 47.3
2018 Male, age 76, both hemispheres 46.9
2250 Female, age 67, right hemisphere 45.1
2245 Female, age 91, both hemispheres 43.9
Perirhinal gyrus
nTPM: 49.7
1794 Male, age 80, right hemisphere 57.9
2521 Female, age 94, right hemisphere 52.1
2848 Male, age 76, right hemisphere 49.0
1847 Female, age 91, left hemisphere 47.8
1841 Female, age 85, right hemisphere 41.9
Subiculum
nTPM: 44.6
2619 Male, age 74, both hemispheres 54.0
1977 Female, age 85, both hemispheres 45.8
2729 Female, age 91, right hemisphere 43.1
2042 Male, age 76, both hemispheres 43.0
2438 Female, age 94, left hemisphere 42.6
1901 Male, age 80, both hemispheres 38.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.2
Samples: 197

Max nTPM: 58.0
Min nTPM: 7.6
Std nTPM: 7.6
Median nTPM: 25.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 58.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 52.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 47.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 46.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 43.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 41.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 41.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 40.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 40.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 39.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 39.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.7
FF:10153-102I9 76 years, female 13.2
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Subiculum
nTPM: 35.6
Samples: 4

Max nTPM: 46.2
Min nTPM: 26.9
Sample A Female 46.2
Sample B Female 31.1
Sample C Male 38.2
Sample D Male 26.9
Dorsal hippocampus
nTPM: 24.8
Samples: 4

Max nTPM: 30.3
Min nTPM: 13.2
Sample A Female 30.3
Sample B Female 27.9
Sample C Male 27.9
Sample D Male 13.2
Entorhinal cortex
nTPM: 30.1
Samples: 4

Max nTPM: 38.5
Min nTPM: 24.2
Sample A Female 30.9
Sample B Female 24.2
Sample C Male 38.5
Sample D Male 26.9
Ventral hippocampus
nTPM: 29.6
Samples: 4

Max nTPM: 42.4
Min nTPM: 20.9
Sample A Female 25.1
Sample B Female 20.9
Sample C Male 42.4
Sample D Male 29.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 23.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.2
Samples: 4

Max nTPM: 27.5
Min nTPM: 18.2
Sample A Male 18.2
Sample B Male 23.8
Sample C Female 23.2
Sample D Female 27.5
Hippocampal formation
nTPM: 16.8
Samples: 4

Max nTPM: 20.2
Min nTPM: 12.5
Sample A Male 17.9
Sample B Male 16.6
Sample C Female 12.5
Sample D Female 20.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69169827 Antisense, RP_050321_04_C08, Mouse strain C57BL/6J (56 days, male) 0.7

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