HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:144.3 nTPM
HPA Brain:134.8 nTPM
GTEx:144.3 nTPM
FANTOM5:140.2 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:97.3 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018890
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 134.8
Sample id Sample description nTPM
Hippocampus
nTPM: 134.8
2621 Female, age 67, right hemisphere 148.7
1855 Male, age 76, left hemisphere 145.2
1898 Male, age 80, left hemisphere 131.8
1911 Female, age 85, right hemisphere 131.7
2529 Female, age 94, left hemisphere 129.4
2148 Female, age 91, left hemisphere 122.2
Dentate gyrus
nTPM: 111.0
2010 Male, age 76, both hemispheres 128.4
1927 Female, age 91, both hemispheres 122.7
2531 Female, age 67, both hemispheres 116.5
2530 Female, age 94, left hemisphere 105.1
2246 Female, age 85, both hemispheres 97.4
2528 Male, age 74, both hemispheres 95.8
Entorhinal gyrus
nTPM: 113.4
2613 Female, age 94, left hemisphere 125.8
1938 Female, age 85, left hemisphere 124.9
1787 Male, age 76, left hemisphere 124.0
2686 Male, age 75, right hemisphere 118.6
2764 Male, age 80, right hemisphere 106.6
2117 Female, age 91, right hemisphere 80.1
Hippocampus, CA1
nTPM: 121.7
2749 Male, age 80, left hemisphere 172.5
1873 Female, age 85, both hemispheres 129.6
2527 Male, age 74, both hemispheres 124.6
2082 Female, age 91, right hemisphere 96.6
2045 Male, age 76, both hemispheres 85.3
Hippocampus, CA2
nTPM: 123.2
1963 Male, age 80, left hemisphere 228.8
1892 Male, age 76, both hemispheres 146.9
2113 Female, age 91, right hemisphere 105.3
2437 Female, age 94, left hemisphere 94.1
2249 Male, age 74, both hemispheres 87.4
1940 Female, age 85, left hemisphere 76.9
Hippocampus, CA3
nTPM: 125.4
2861 Female, age 67, both hemispheres 175.5
2137 Male, age 80, left hemisphere 167.6
1867 Male, age 76, both hemispheres 122.0
2620 Female, age 94, left hemisphere 107.5
1891 Female, age 85, both hemispheres 96.0
2436 Male, age 74, both hemispheres 84.1
Parahippocampal cortex
nTPM: 107.7
2622 Female, age 67, right hemisphere 127.7
2245 Female, age 91, both hemispheres 121.2
2692 Male, age 74, both hemispheres 119.7
1933 Female, age 85, both hemispheres 111.4
1850 Male, age 80, both hemispheres 108.1
2018 Male, age 76, both hemispheres 107.7
2532 Female, age 72, left hemisphere 105.5
2250 Female, age 67, right hemisphere 98.6
1990 Female, age 91, right hemisphere 93.6
2693 Female, age 94, both hemispheres 83.3
Perirhinal gyrus
nTPM: 105.9
1847 Female, age 91, left hemisphere 130.1
1841 Female, age 85, right hemisphere 105.2
2848 Male, age 76, right hemisphere 102.8
1794 Male, age 80, right hemisphere 100.6
2521 Female, age 94, right hemisphere 90.7
Subiculum
nTPM: 98.1
2619 Male, age 74, both hemispheres 109.1
1901 Male, age 80, both hemispheres 105.7
2042 Male, age 76, both hemispheres 100.8
1977 Female, age 85, both hemispheres 95.6
2729 Female, age 91, right hemisphere 92.5
2438 Female, age 94, left hemisphere 85.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 144.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 144.3
Samples: 197

Max nTPM: 404.3
Min nTPM: 19.4
Std nTPM: 65.4
Median nTPM: 134.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 404.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 364.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 358.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 338.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 306.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 303.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 302.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 291.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 281.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 273.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 273.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.2
FF:10153-102I9 76 years, female 160.1
FF:10169-103B7 60 years, female 120.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.9
Pig sample Sample description nTPM
Subiculum
nTPM: 45.2
Samples: 4

Max nTPM: 59.0
Min nTPM: 37.0
Sample A Female 59.0
Sample B Female 43.6
Sample C Male 41.2
Sample D Male 37.0
Dorsal hippocampus
nTPM: 48.3
Samples: 4

Max nTPM: 61.5
Min nTPM: 39.1
Sample A Female 61.5
Sample B Female 52.3
Sample C Male 40.1
Sample D Male 39.1
Entorhinal cortex
nTPM: 54.9
Samples: 4

Max nTPM: 66.4
Min nTPM: 43.8
Sample A Female 53.7
Sample B Female 55.8
Sample C Male 66.4
Sample D Male 43.8
Ventral hippocampus
nTPM: 46.6
Samples: 4

Max nTPM: 54.6
Min nTPM: 36.2
Sample A Female 41.1
Sample B Female 36.2
Sample C Male 54.6
Sample D Male 54.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 97.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 97.4
Samples: 4

Max nTPM: 102.7
Min nTPM: 94.0
Sample A Male 97.7
Sample B Male 94.0
Sample C Female 102.7
Sample D Female 95.0
Hippocampal formation
nTPM: 92.3
Samples: 4

Max nTPM: 101.9
Min nTPM: 85.8
Sample A Male 101.9
Sample B Male 90.0
Sample C Female 85.8
Sample D Female 91.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
385995 Antisense, RP_040625_01_G03, Mouse strain C57BL/6J (56 days, male) 2.4
74047902 Antisense, RP_051214_02_B12, Mouse strain C57BL/6J (56 days, male) 1.4
74822602 Antisense, RP_060321_02_H01, Mouse strain C57BL/6J (56 days, male) 0.7

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