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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
110.1
nTPM
Monaco:
210.9
nTPM
Schmiedel:
169.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
110.1
HPA sample
nTPM
gdT-cell nTPM: 74.4
Samples: 6
Max nTPM: 99.6
Min nTPM: 68.2
P10809_1007
68.5
P10809_1022
99.6
P10809_1041
68.7
P10809_1060
70.6
P10809_1077
68.2
P10809_1098
70.6
MAIT T-cell nTPM: 60.3
Samples: 6
Max nTPM: 67.1
Min nTPM: 49.0
P10809_1006
63.1
P10809_1024
49.0
P10809_1043
54.6
P10809_1062
63.6
P10809_1083
67.1
P10809_1097
64.2
Memory CD4 T-cell nTPM: 71.6
Samples: 6
Max nTPM: 82.6
Min nTPM: 58.6
P10809_1014
74.9
P10809_1026
82.6
P10809_1045
71.2
P10809_1064
66.5
P10809_1086
58.6
P10809_1113
75.9
Memory CD8 T-cell nTPM: 76.5
Samples: 5
Max nTPM: 86.3
Min nTPM: 63.1
P10809_1012
86.3
P10809_1027
79.9
P10809_1046
78.3
P10809_1065
63.1
P10809_1111
74.7
Naive CD4 T-cell nTPM: 41.3
Samples: 6
Max nTPM: 48.4
Min nTPM: 32.0
P10809_1015
34.9
P10809_1030
37.5
P10809_1049
32.0
P10809_1068
47.1
P10809_1085
48.4
P10809_1112
47.6
Naive CD8 T-cell nTPM: 48.4
Samples: 6
Max nTPM: 60.3
Min nTPM: 40.5
P10809_1016
41.8
P10809_1031
43.4
P10809_1050
50.8
P10809_1069
60.3
P10809_1087
53.5
P10809_1110
40.5
T-reg nTPM: 110.1
Samples: 6
Max nTPM: 137.0
Min nTPM: 87.9
P10809_1018
127.3
P10809_1037
87.9
P10809_1056
103.0
P10809_1075
92.4
P10809_1094
137.0
P10809_1106
112.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
210.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 152.2
Samples: 4
Max nTPM: 195.3
Min nTPM: 137.4
RHH5202_R3573
137.4
RHH5230_R3602
195.3
RHH5259_R3631
138.0
RHH5288_R3660
138.2
Effector memory CD8 T-cell nTPM: 211.0
Samples: 4
Max nTPM: 241.6
Min nTPM: 182.3
RHH5203_R3574
204.1
RHH5231_R3603
182.3
RHH5260_R3632
215.8
RHH5289_R3661
241.6
MAIT T-cell nTPM: 130.4
Samples: 4
Max nTPM: 155.9
Min nTPM: 106.0
RHH5233_R3605
138.9
RHH5205_R3576
155.9
RHH5262_R3634
120.6
RHH5297_R3663
106.0
Memory CD4 T-cell TFH nTPM: 170.3
Samples: 4
Max nTPM: 199.2
Min nTPM: 146.0
RHH5300_R3666
156.9
RHH5236_R3608
199.2
RHH5265_R3637
146.0
RHH5208_R3579
179.2
Memory CD4 T-cell Th1 nTPM: 145.7
Samples: 4
Max nTPM: 167.7
Min nTPM: 130.5
RHH5210_R3581
130.5
RHH5302_R3668
139.1
RHH5238_R3610
167.7
RHH5267_R3639
145.6
Memory CD4 T-cell Th1/Th17 nTPM: 175.0
Samples: 4
Max nTPM: 205.9
Min nTPM: 135.4
RHH5303_R3669
205.9
RHH5211_R3582
180.2
RHH5239_R3611
178.4
RHH5268_R3640
135.4
Memory CD4 T-cell Th17 nTPM: 189.5
Samples: 4
Max nTPM: 250.6
Min nTPM: 150.9
RHH5304_R3670
186.8
RHH5212_R3583
169.6
RHH5240_R3612
250.6
RHH5269_R3641
150.9
Memory CD4 T-cell Th2 nTPM: 168.2
Samples: 4
Max nTPM: 176.3
Min nTPM: 145.5
RHH5305_R3671
145.5
RHH5213_R3584
175.6
RHH5241_R3613
176.3
RHH5270_R3642
175.2
Naive CD4 T-cell nTPM: 112.3
Samples: 4
Max nTPM: 121.0
Min nTPM: 103.4
RHH5306_R3672
121.0
RHH5214_R3585
113.8
RHH5242_R3614
103.4
RHH5271_R3643
111.0
Naive CD8 T-cell nTPM: 94.8
Samples: 4
Max nTPM: 103.2
Min nTPM: 89.5
RHH5201_R3572
103.2
RHH5229_R3601
89.5
RHH5258_R3630
93.3
RHH5287_R3659
93.3
Non-Vd2 gdTCR nTPM: 184.2
Samples: 4
Max nTPM: 229.0
Min nTPM: 166.5
RHH5235_R3607
229.0
RHH5264_R3636
168.7
RHH5207_R3578
172.6
RHH5299_R3665
166.5
T-reg nTPM: 168.4
Samples: 4
Max nTPM: 204.4
Min nTPM: 149.8
RHH5301_R3667
150.4
RHH5237_R3609
204.4
RHH5266_R3638
169.1
RHH5209_R3580
149.8
Terminal effector memory CD4 T-cell nTPM: 191.5
Samples: 2
Max nTPM: 233.4
Min nTPM: 149.5
RHH5243_R3615
233.4
RHH5272_R3644
149.5
Terminal effector memory CD8 T-cell nTPM: 179.0
Samples: 4
Max nTPM: 196.4
Min nTPM: 149.2
RHH5232_R3604
185.9
RHH5204_R3575
149.2
RHH5261_R3633
196.4
RHH5296_R3662
184.4
Vd2 gdTCR nTPM: 144.2
Samples: 4
Max nTPM: 158.8
Min nTPM: 120.3
RHH5234_R3606
158.8
RHH5206_R3577
138.9
RHH5263_R3635
158.8
RHH5298_R3664
120.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
