MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1131.5 nTPM
HPA Brain:578.3 nTPM
GTEx:1131.5 nTPM
FANTOM5:780.8 Scaled Tags Per Million
Pig:4043.3 nTPM
Mouse:224.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 578.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 463.3
2828 Female, age 72, unknown 576.5
1833 Male, age 53, unknown 517.4
1870 Female, age 42, unknown 511.5
2586 Male, age 75, left hemisphere 492.6
2411 Female, age 72, unknown 463.1
1830 Male, age 51, unknown 445.7
1827 Male, age 72, unknown 419.2
2019 Male, age 18, unknown 411.5
2666 Male, age 74, left hemisphere 409.1
2219 Male, age 76, both hemispheres 385.9
Dorsal raphe nucleus
nTPM: 397.6
2750 Male, age 76, both hemispheres 519.3
1828 Male, age 53, unknown 395.9
2016 Female, age 72, unknown 373.3
2298 Female, age 72, unknown 363.7
2047 Male, age 72, unknown 335.6
Inferior colliculus
nTPM: 373.4
2849 Male, age 72, unknown 435.8
1848 Female, age 42, unknown 431.5
1890 Male, age 53, unknown 348.8
2097 Female, age 72, unknown 277.7
Median raphe nucleus
nTPM: 412.2
2220 Male, age 76, midline 412.2
Periaquaductal grey, anterior
nTPM: 341.2
1795 Male, age 51, unknown 365.1
1947 Male, age 18, unknown 330.2
2502 Female, age 75, unknown 328.3
Periaquaductal grey, dorsal
nTPM: 361.6
2850 Male, age 76, both hemispheres 414.5
2464 Female, age 72, unknown 376.0
1831 Male, age 72, unknown 336.3
1840 Male, age 53, unknown 319.8
Periaquaductal grey, lateral
nTPM: 399.0
2053 Male, age 18, unknown 451.5
2140 Male, age 76, both hemispheres 420.7
2272 Male, age 74, both hemispheres 324.9
Pretectal area
nTPM: 404.8
2667 Female, age 75, unknown 539.6
1815 Male, age 53, unknown 496.1
1817 Female, age 42, unknown 486.3
2316 Male, age 76, right hemisphere 460.0
2825 Male, age 18, unknown 438.0
2224 Female, age 72, unknown 407.6
1944 Female, age 72, unknown 372.5
1816 Male, age 51, unknown 356.4
2007 Male, age 72, unknown 340.8
2273 Male, age 74, both hemispheres 316.6
2407 Male, age 75, both hemispheres 238.9
Red nucleus
nTPM: 578.3
2227 Male, age 72, unknown 713.7
2769 Male, age 72, unknown 685.4
1821 Female, age 72, unknown 673.7
2503 Female, age 72, unknown 670.1
1954 Female, age 42, unknown 669.7
1904 Male, age 53, unknown 630.6
2823 Male, age 76, right hemisphere 624.5
1865 Male, age 51, unknown 592.0
2588 Male, age 74, left hemisphere 502.1
2725 Female, age 75, unknown 438.4
2785 Male, age 18, unknown 398.7
2584 Male, age 75, left hemisphere 340.6
Substantia nigra
nTPM: 421.6
2699 Male, age 18, unknown 641.2
1916 Female, age 42, unknown 554.7
1851 Male, age 51, unknown 465.6
2665 Male, age 74, both hemispheres 427.8
1889 Female, age 72, unknown 416.0
2590 Female, age 75, unknown 366.9
2583 Male, age 75, right hemisphere 353.9
2409 Female, age 72, unknown 352.4
1941 Male, age 53, unknown 338.7
2241 Male, age 72, unknown 298.5
Superior colliculus
nTPM: 395.6
1913 Female, age 42, unknown 491.9
1995 Male, age 72, unknown 469.2
2668 Female, age 75, unknown 427.8
1796 Male, age 53, unknown 420.9
1839 Male, age 51, unknown 418.9
2587 Male, age 74, left hemisphere 408.8
2087 Female, age 72, unknown 360.4
1895 Male, age 76, right hemisphere 324.0
2261 Male, age 18, unknown 322.4
2664 Male, age 75, both hemispheres 311.8
Ventral tegmental area
nTPM: 449.9
2223 Female, age 72, unknown 650.6
2218 Male, age 76, both hemispheres 462.6
2410 Female, age 72, unknown 431.9
1915 Female, age 42, unknown 415.2
2021 Male, age 53, unknown 369.8
1942 Male, age 51, unknown 369.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1131.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1131.5
Samples: 139

Max nTPM: 2945.0
Min nTPM: 181.8
Std nTPM: 460.2
Median nTPM: 1087.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2945.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2406.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2304.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2171.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2129.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 2043.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2035.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1946.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1939.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1907.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1861.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 780.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 780.8
FF:10158-103A5 76 years, female 780.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 4043.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4043.3
Samples: 4

Max nTPM: 5249.7
Min nTPM: 3293.7
Sample A Female 5249.7
Sample B Female 3293.7
Sample C Male 3671.1
Sample D Male 3958.6
Midbrain
nTPM: 3996.4
Samples: 4

Max nTPM: 7324.3
Min nTPM: 1875.7
Sample A Female 7324.3
Sample B Female 4228.4
Sample C Male 2557.1
Sample D Male 1875.7
Periaqueductal gray
nTPM: 3628.4
Samples: 3

Max nTPM: 4112.1
Min nTPM: 3145.4
Sample B Female 4112.1
Sample C Male 3627.6
Sample D Male 3145.4
Superior colliculi
nTPM: 2827.1
Samples: 4

Max nTPM: 3635.0
Min nTPM: 1545.7
Sample A Female 3635.0
Sample B Female 1545.7
Sample C Male 2852.0
Sample D Male 3275.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 224.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 224.0
Samples: 4

Max nTPM: 235.6
Min nTPM: 217.2
Sample A Male 235.6
Sample B Male 217.2
Sample C Female 217.2
Sample D Female 225.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70429411 Antisense, RP_050614_01_F03, Mouse strain C57BL/6J (56 days, male) 0.5

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