MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.1 nTPM
HPA Brain:27.1 nTPM
GTEx:12.1 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:22.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.0
2586 Male, age 75, left hemisphere 27.8
1827 Male, age 72, unknown 27.7
2666 Male, age 74, left hemisphere 26.2
2828 Female, age 72, unknown 25.7
2219 Male, age 76, both hemispheres 24.2
2019 Male, age 18, unknown 24.1
2411 Female, age 72, unknown 21.0
1833 Male, age 53, unknown 18.2
1830 Male, age 51, unknown 18.1
1870 Female, age 42, unknown 17.0
Dorsal raphe nucleus
nTPM: 21.1
2298 Female, age 72, unknown 24.1
2047 Male, age 72, unknown 23.3
1828 Male, age 53, unknown 19.8
2750 Male, age 76, both hemispheres 19.6
2016 Female, age 72, unknown 18.8
Inferior colliculus
nTPM: 21.2
2849 Male, age 72, unknown 23.0
1848 Female, age 42, unknown 22.1
2097 Female, age 72, unknown 20.6
1890 Male, age 53, unknown 19.3
Median raphe nucleus
nTPM: 21.3
2220 Male, age 76, midline 21.3
Periaquaductal grey, anterior
nTPM: 27.1
1795 Male, age 51, unknown 29.6
2502 Female, age 75, unknown 27.5
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 23.8
1840 Male, age 53, unknown 27.3
1831 Male, age 72, unknown 24.5
2464 Female, age 72, unknown 23.0
2850 Male, age 76, both hemispheres 20.4
Periaquaductal grey, lateral
nTPM: 22.1
2272 Male, age 74, both hemispheres 23.0
2053 Male, age 18, unknown 21.9
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 27.1
1816 Male, age 51, unknown 40.1
1944 Female, age 72, unknown 32.8
2007 Male, age 72, unknown 32.3
1817 Female, age 42, unknown 29.4
1815 Male, age 53, unknown 27.6
2224 Female, age 72, unknown 23.5
2825 Male, age 18, unknown 22.9
2407 Male, age 75, both hemispheres 22.5
2667 Female, age 75, unknown 22.5
2273 Male, age 74, both hemispheres 22.1
2316 Male, age 76, right hemisphere 22.1
Red nucleus
nTPM: 18.3
2584 Male, age 75, left hemisphere 24.5
2785 Male, age 18, unknown 24.1
2588 Male, age 74, left hemisphere 20.6
2725 Female, age 75, unknown 18.8
2823 Male, age 76, right hemisphere 18.6
2503 Female, age 72, unknown 17.8
2227 Male, age 72, unknown 16.5
2769 Male, age 72, unknown 16.5
1904 Male, age 53, unknown 16.1
1954 Female, age 42, unknown 15.8
1821 Female, age 72, unknown 15.6
1865 Male, age 51, unknown 15.2
Substantia nigra
nTPM: 21.0
2665 Male, age 74, both hemispheres 27.7
2590 Female, age 75, unknown 24.1
1916 Female, age 42, unknown 23.4
1889 Female, age 72, unknown 23.3
2583 Male, age 75, right hemisphere 22.9
1941 Male, age 53, unknown 22.4
1851 Male, age 51, unknown 18.7
2409 Female, age 72, unknown 16.5
2241 Male, age 72, unknown 16.2
2699 Male, age 18, unknown 14.7
Superior colliculus
nTPM: 25.0
2087 Female, age 72, unknown 33.5
2664 Male, age 75, both hemispheres 33.0
2261 Male, age 18, unknown 31.5
1796 Male, age 53, unknown 25.1
2668 Female, age 75, unknown 23.5
1839 Male, age 51, unknown 21.9
2587 Male, age 74, left hemisphere 21.8
1895 Male, age 76, right hemisphere 20.4
1995 Male, age 72, unknown 20.1
1913 Female, age 42, unknown 19.1
Ventral tegmental area
nTPM: 20.1
2021 Male, age 53, unknown 24.1
1942 Male, age 51, unknown 21.7
2218 Male, age 76, both hemispheres 20.6
2410 Female, age 72, unknown 20.6
1915 Female, age 42, unknown 19.5
2223 Female, age 72, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.1
Samples: 139

Max nTPM: 31.9
Min nTPM: 2.7
Std nTPM: 6.0
Median nTPM: 11.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 31.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 29.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 26.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 23.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 22.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 22.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 19.7
Min nTPM: 15.4
Sample A Female 19.7
Sample B Female 16.5
Sample C Male 19.5
Sample D Male 15.4
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 52.0
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 19.5
Sample C Male 52.0
Sample D Male 34.9
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 25.4
Min nTPM: 19.7
Sample B Female 22.2
Sample C Male 25.4
Sample D Male 19.7
Superior colliculi
nTPM: 34.9
Samples: 4

Max nTPM: 48.9
Min nTPM: 27.1
Sample A Female 27.7
Sample B Female 27.1
Sample C Male 48.9
Sample D Male 35.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 21.2
Sample A Male 21.6
Sample B Male 24.5
Sample C Female 23.8
Sample D Female 21.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69448966 Antisense, RP_050419_03_A04, Mouse strain C57BL/6J (56 days, male) 1.2
73925718 Antisense, RP_051214_03_B05, Mouse strain C57BL/6J (56 days, male) 0.7

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