MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:107.4 nTPM
HPA Brain:196.5 nTPM
GTEx:107.4 nTPM
FANTOM5:46.6 Scaled Tags Per Million
Pig:126.8 nTPM
Mouse:41.0 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 196.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.4
2586 Male, age 75, left hemisphere 287.1
2828 Female, age 72, unknown 239.3
2666 Male, age 74, left hemisphere 217.4
1827 Male, age 72, unknown 176.9
2019 Male, age 18, unknown 154.6
1833 Male, age 53, unknown 143.9
1830 Male, age 51, unknown 133.2
1870 Female, age 42, unknown 124.8
2219 Male, age 76, both hemispheres 121.7
2411 Female, age 72, unknown 115.4
Dorsal raphe nucleus
nTPM: 147.5
1828 Male, age 53, unknown 189.0
2016 Female, age 72, unknown 179.6
2047 Male, age 72, unknown 159.7
2298 Female, age 72, unknown 125.0
2750 Male, age 76, both hemispheres 84.3
Inferior colliculus
nTPM: 196.5
1848 Female, age 42, unknown 214.8
2849 Male, age 72, unknown 210.3
1890 Male, age 53, unknown 195.8
2097 Female, age 72, unknown 165.2
Median raphe nucleus
nTPM: 132.1
2220 Male, age 76, midline 132.1
Periaquaductal grey, anterior
nTPM: 181.3
2502 Female, age 75, unknown 200.7
1795 Male, age 51, unknown 178.1
1947 Male, age 18, unknown 165.2
Periaquaductal grey, dorsal
nTPM: 161.5
1840 Male, age 53, unknown 183.0
2464 Female, age 72, unknown 160.9
2850 Male, age 76, both hemispheres 159.6
1831 Male, age 72, unknown 142.4
Periaquaductal grey, lateral
nTPM: 144.1
2140 Male, age 76, both hemispheres 161.2
2053 Male, age 18, unknown 150.7
2272 Male, age 74, both hemispheres 120.4
Pretectal area
nTPM: 161.3
1816 Male, age 51, unknown 218.6
1944 Female, age 72, unknown 209.7
1817 Female, age 42, unknown 201.3
1815 Male, age 53, unknown 171.3
2007 Male, age 72, unknown 171.1
2407 Male, age 75, both hemispheres 147.2
2667 Female, age 75, unknown 146.9
2825 Male, age 18, unknown 144.9
2316 Male, age 76, right hemisphere 128.1
2273 Male, age 74, both hemispheres 120.8
2224 Female, age 72, unknown 114.8
Red nucleus
nTPM: 160.9
2588 Male, age 74, left hemisphere 193.4
2503 Female, age 72, unknown 182.6
2725 Female, age 75, unknown 181.1
1954 Female, age 42, unknown 170.8
2769 Male, age 72, unknown 168.3
2227 Male, age 72, unknown 165.0
2823 Male, age 76, right hemisphere 163.0
1821 Female, age 72, unknown 152.8
2785 Male, age 18, unknown 145.9
1865 Male, age 51, unknown 141.2
2584 Male, age 75, left hemisphere 133.8
1904 Male, age 53, unknown 133.5
Substantia nigra
nTPM: 173.3
1916 Female, age 42, unknown 233.4
2699 Male, age 18, unknown 207.7
2665 Male, age 74, both hemispheres 199.4
2583 Male, age 75, right hemisphere 169.4
1851 Male, age 51, unknown 168.5
1889 Female, age 72, unknown 165.8
1941 Male, age 53, unknown 150.5
2590 Female, age 75, unknown 149.6
2241 Male, age 72, unknown 145.7
2409 Female, age 72, unknown 142.8
Superior colliculus
nTPM: 174.2
2664 Male, age 75, both hemispheres 269.7
2087 Female, age 72, unknown 205.5
2261 Male, age 18, unknown 184.2
1796 Male, age 53, unknown 172.3
2668 Female, age 75, unknown 166.5
2587 Male, age 74, left hemisphere 166.1
1839 Male, age 51, unknown 162.9
1995 Male, age 72, unknown 146.4
1913 Female, age 42, unknown 135.5
1895 Male, age 76, right hemisphere 132.9
Ventral tegmental area
nTPM: 139.5
1915 Female, age 42, unknown 165.1
1942 Male, age 51, unknown 149.5
2410 Female, age 72, unknown 145.3
2218 Male, age 76, both hemispheres 142.6
2021 Male, age 53, unknown 128.4
2223 Female, age 72, unknown 106.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.4
Samples: 139

Max nTPM: 231.0
Min nTPM: 24.4
Std nTPM: 43.0
Median nTPM: 102.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 231.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 227.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 219.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 206.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 186.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 185.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 182.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 179.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 177.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 175.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 170.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.6
FF:10158-103A5 76 years, female 46.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 126.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.4
Samples: 4

Max nTPM: 96.6
Min nTPM: 59.0
Sample A Female 73.4
Sample B Female 59.0
Sample C Male 96.6
Sample D Male 72.5
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 144.9
Min nTPM: 59.1
Sample A Female 59.1
Sample B Female 70.7
Sample C Male 144.9
Sample D Male 80.5
Periaqueductal gray
nTPM: 68.0
Samples: 3

Max nTPM: 82.1
Min nTPM: 55.9
Sample B Female 66.1
Sample C Male 82.1
Sample D Male 55.9
Superior colliculi
nTPM: 126.8
Samples: 4

Max nTPM: 151.8
Min nTPM: 107.5
Sample A Female 107.5
Sample B Female 118.9
Sample C Male 151.8
Sample D Male 128.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 36.8
Sample A Male 45.7
Sample B Male 36.8
Sample C Female 40.3
Sample D Female 41.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
76098306 Antisense, RP_060626_01_E08, Mouse strain C57BL/6J (56 days, male) 13.6

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