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SENP3
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  • SENP3
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SENP3
Synonyms DKFZP586K0919, DKFZp762A152, SMT3IP1, SSP3, Ulp1
Gene descriptioni

Full gene name according to HGNC.

SUMO specific peptidase 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband p13.1
Chromosome location (bp) 7561919 - 7571969
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000161956 (version 109)
Entrez gene 26168
HGNC HGNC:17862
UniProt Q9H4L4 (UniProt - Evidence at protein level)
neXtProt NX_Q9H4L4
GeneCards SENP3
Antibodypedia SENP3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Protease that releases SUMO2 and SUMO3 monomers from sumoylated substrates, but has only weak activity against SUMO1 conjugates 1, 2. Deconjugates SUMO2 from MEF2D, which increases its transcriptional activation capability 3. Deconjugates SUMO2 and SUMO3 from CDCA8 4. Redox sensor that, when redistributed into nucleoplasm, can act as an effector to enhance HIF1A transcriptional activity by desumoylating EP300 5. Required for rRNA processing through deconjugation of SUMO2 and SUMO3 from nucleophosmin, NPM1 6. Plays a role in the regulation of sumoylation status of ZNF148 7. Functions as a component of the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMC complex is recruited to ZNF148 by methylated CHTOP, leading to desumoylation of ZNF148 and subsequent transactivation of ZNF148 target genes 8. Deconjugates SUMO2 from KAT5 9.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, Protease, Thiol protease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ubl conjugation pathway
Gene summary (Entrez)i

Useful information about the gene from Entrez

The reversible posttranslational modification of proteins by the addition of small ubiquitin-like SUMO proteins (see SUMO1; MIM 601912) is required for numerous biologic processes. SUMO-specific proteases, such as SENP3, are responsible for the initial processing of SUMO precursors to generate a C-terminal diglycine motif required for the conjugation reaction. They also have isopeptidase activity for the removal of SUMO from high molecular mass SUMO conjugates (Di Bacco et al., 2006).[supplied by OMIM, Jun 2009]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SENP3-201
ENSP00000314029
ENST00000321337
Q9H4L4
[Direct mapping] Sentrin-specific protease 3
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0016787 [hydrolase activity]
GO:0016926 [protein desumoylation]
GO:0016929 [deSUMOylase activity]
GO:0019538 [protein metabolic process]
GO:0071339 [MLL1 complex]
Show all
574 aa
65 kDa
No 0
SENP3-202
ENSP00000403712
ENST00000429205
Q9H4L4
[Direct mapping] Sentrin-specific protease 3
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0016787 [hydrolase activity]
GO:0016926 [protein desumoylation]
GO:0016929 [deSUMOylase activity]
GO:0071339 [MLL1 complex]
Show all
574 aa
65 kDa
No 0
SENP3-203
ENSP00000463358
ENST00000580231
J3QL36
[Direct mapping] Sentrin-specific protease 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0006508 [proteolysis]
GO:0008234 [cysteine-type peptidase activity]
GO:0016787 [hydrolase activity]
GO:0016926 [protein desumoylation]
GO:0071339 [MLL1 complex]
Show all
237 aa
27.8 kDa
No 0
SENP3-206
ENSP00000462461
ENST00000581093
J3KSF5
[Direct mapping] Sentrin-specific protease 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008234 [cysteine-type peptidase activity]
GO:0016926 [protein desumoylation]
GO:0071339 [MLL1 complex]
Show all
82 aa
9.9 kDa
No 0
SENP3-207
ENSP00000464172
ENST00000582789
J3QRE4
[Direct mapping] Sentrin-specific protease 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008234 [cysteine-type peptidase activity]
GO:0016926 [protein desumoylation]
GO:0071339 [MLL1 complex]
Show all
110 aa
13.3 kDa
No 0
SENP3-209
ENSP00000479187
ENST00000610454
A0A087WV50
[Direct mapping] Sentrin-specific protease 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006508 [proteolysis]
GO:0008234 [cysteine-type peptidase activity]
GO:0016926 [protein desumoylation]
GO:0071339 [MLL1 complex]
Show all
177 aa
20.5 kDa
No 0

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