HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:1452.5 nTPM
HPA Brain:396.5 nTPM
GTEx:1452.5 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Pig:298.3 nTPM
Mouse:1569.7 nTPM
Allen mouse:11.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030449Antibody CAB037301
Glial cells Not detectedMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 396.5
Sample id Sample description nTPM
Hippocampus
nTPM: 394.9
2621 Female, age 67, right hemisphere 456.0
2529 Female, age 94, left hemisphere 439.0
1898 Male, age 80, left hemisphere 429.0
1855 Male, age 76, left hemisphere 376.8
1911 Female, age 85, right hemisphere 358.8
2148 Female, age 91, left hemisphere 309.9
Dentate gyrus
nTPM: 382.8
2530 Female, age 94, left hemisphere 528.8
2246 Female, age 85, both hemispheres 413.1
2010 Male, age 76, both hemispheres 396.9
2531 Female, age 67, both hemispheres 362.1
1927 Female, age 91, both hemispheres 317.8
2528 Male, age 74, both hemispheres 278.4
Entorhinal gyrus
nTPM: 360.6
2686 Male, age 75, right hemisphere 446.3
1787 Male, age 76, left hemisphere 403.3
2117 Female, age 91, right hemisphere 352.5
1938 Female, age 85, left hemisphere 347.9
2764 Male, age 80, right hemisphere 309.7
2613 Female, age 94, left hemisphere 304.2
Hippocampus, CA1
nTPM: 349.9
1873 Female, age 85, both hemispheres 381.2
2045 Male, age 76, both hemispheres 360.8
2082 Female, age 91, right hemisphere 339.7
2527 Male, age 74, both hemispheres 335.0
2749 Male, age 80, left hemisphere 332.5
Hippocampus, CA2
nTPM: 364.5
1892 Male, age 76, both hemispheres 437.9
1963 Male, age 80, left hemisphere 434.1
2437 Female, age 94, left hemisphere 353.8
1940 Female, age 85, left hemisphere 326.1
2113 Female, age 91, right hemisphere 322.2
2249 Male, age 74, both hemispheres 312.8
Hippocampus, CA3
nTPM: 323.5
1867 Male, age 76, both hemispheres 435.1
1891 Female, age 85, both hemispheres 380.7
2861 Female, age 67, both hemispheres 322.5
2137 Male, age 80, left hemisphere 316.8
2436 Male, age 74, both hemispheres 258.3
2620 Female, age 94, left hemisphere 227.5
Parahippocampal cortex
nTPM: 355.1
2018 Male, age 76, both hemispheres 469.0
1850 Male, age 80, both hemispheres 385.7
2532 Female, age 72, left hemisphere 382.5
2250 Female, age 67, right hemisphere 374.1
2245 Female, age 91, both hemispheres 371.9
2692 Male, age 74, both hemispheres 337.8
1990 Female, age 91, right hemisphere 332.5
1933 Female, age 85, both hemispheres 332.3
2693 Female, age 94, both hemispheres 285.6
2622 Female, age 67, right hemisphere 279.9
Perirhinal gyrus
nTPM: 376.3
2848 Male, age 76, right hemisphere 409.0
1841 Female, age 85, right hemisphere 405.0
1794 Male, age 80, right hemisphere 387.6
1847 Female, age 91, left hemisphere 376.8
2521 Female, age 94, right hemisphere 303.0
Subiculum
nTPM: 396.5
2438 Female, age 94, left hemisphere 505.7
1977 Female, age 85, both hemispheres 431.9
2042 Male, age 76, both hemispheres 428.7
1901 Male, age 80, both hemispheres 379.2
2619 Male, age 74, both hemispheres 317.6
2729 Female, age 91, right hemisphere 315.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 1452.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1452.5
Samples: 197

Max nTPM: 4493.4
Min nTPM: 686.3
Std nTPM: 515.9
Median nTPM: 1353.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 4493.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3225.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 2831.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2794.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2785.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 2784.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2761.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2594.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2567.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2460.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 2429.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 70.0
FF:10153-102I9 76 years, female 87.0
FF:10169-103B7 60 years, female 52.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 298.3
Pig sample Sample description nTPM
Subiculum
nTPM: 267.1
Samples: 4

Max nTPM: 367.6
Min nTPM: 209.2
Sample A Female 367.6
Sample B Female 279.1
Sample C Male 212.5
Sample D Male 209.2
Dorsal hippocampus
nTPM: 298.3
Samples: 4

Max nTPM: 383.4
Min nTPM: 202.5
Sample A Female 383.4
Sample B Female 295.9
Sample C Male 311.2
Sample D Male 202.5
Entorhinal cortex
nTPM: 268.6
Samples: 4

Max nTPM: 360.2
Min nTPM: 202.5
Sample A Female 234.1
Sample B Female 360.2
Sample C Male 277.6
Sample D Male 202.5
Ventral hippocampus
nTPM: 252.9
Samples: 4

Max nTPM: 265.0
Min nTPM: 230.2
Sample A Female 265.0
Sample B Female 258.5
Sample C Male 230.2
Sample D Male 257.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1569.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1569.8
Samples: 4

Max nTPM: 1623.9
Min nTPM: 1481.9
Sample A Male 1567.1
Sample B Male 1481.9
Sample C Female 1623.9
Sample D Female 1606.2
Hippocampal formation
nTPM: 1500.4
Samples: 4

Max nTPM: 1735.6
Min nTPM: 1366.9
Sample A Male 1735.6
Sample B Male 1366.9
Sample C Female 1496.9
Sample D Female 1402.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.8
69816792 Antisense, RP_050510_01_H06, Mouse strain C57BL/6J (56 days, male) 11.8

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