MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.0 nTPM
HPA Brain:55.8 nTPM
GTEx:108.0 nTPM
FANTOM5:140.9 Scaled Tags Per Million
Pig:71.5 nTPM
Mouse:104.6 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.4
2666 Male, age 74, left hemisphere 59.9
2586 Male, age 75, left hemisphere 54.7
2828 Female, age 72, unknown 54.5
1870 Female, age 42, unknown 53.9
1827 Male, age 72, unknown 52.1
2019 Male, age 18, unknown 50.5
2411 Female, age 72, unknown 50.1
1833 Male, age 53, unknown 49.4
1830 Male, age 51, unknown 45.2
2219 Male, age 76, both hemispheres 43.6
Dorsal raphe nucleus
nTPM: 46.0
2750 Male, age 76, both hemispheres 47.6
1828 Male, age 53, unknown 47.5
2016 Female, age 72, unknown 46.4
2298 Female, age 72, unknown 46.0
2047 Male, age 72, unknown 42.6
Inferior colliculus
nTPM: 45.3
2849 Male, age 72, unknown 48.7
1890 Male, age 53, unknown 46.4
1848 Female, age 42, unknown 43.4
2097 Female, age 72, unknown 42.7
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Periaquaductal grey, anterior
nTPM: 48.2
2502 Female, age 75, unknown 53.1
1795 Male, age 51, unknown 49.4
1947 Male, age 18, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 43.5
2850 Male, age 76, both hemispheres 48.3
2464 Female, age 72, unknown 43.9
1831 Male, age 72, unknown 42.8
1840 Male, age 53, unknown 38.9
Periaquaductal grey, lateral
nTPM: 43.5
2140 Male, age 76, both hemispheres 48.9
2053 Male, age 18, unknown 43.3
2272 Male, age 74, both hemispheres 38.2
Pretectal area
nTPM: 46.7
1816 Male, age 51, unknown 52.4
1817 Female, age 42, unknown 50.5
2007 Male, age 72, unknown 50.5
2407 Male, age 75, both hemispheres 49.3
1815 Male, age 53, unknown 48.3
2825 Male, age 18, unknown 46.8
2667 Female, age 75, unknown 46.3
2224 Female, age 72, unknown 45.4
1944 Female, age 72, unknown 45.1
2316 Male, age 76, right hemisphere 40.3
2273 Male, age 74, both hemispheres 39.2
Red nucleus
nTPM: 55.8
2503 Female, age 72, unknown 62.3
1865 Male, age 51, unknown 61.5
2725 Female, age 75, unknown 59.2
1904 Male, age 53, unknown 57.9
1821 Female, age 72, unknown 57.8
2769 Male, age 72, unknown 56.8
2227 Male, age 72, unknown 55.9
2588 Male, age 74, left hemisphere 54.1
1954 Female, age 42, unknown 53.4
2785 Male, age 18, unknown 52.0
2584 Male, age 75, left hemisphere 51.5
2823 Male, age 76, right hemisphere 47.3
Substantia nigra
nTPM: 47.2
2699 Male, age 18, unknown 58.0
2665 Male, age 74, both hemispheres 55.4
1916 Female, age 42, unknown 52.6
1851 Male, age 51, unknown 50.0
1889 Female, age 72, unknown 48.6
1941 Male, age 53, unknown 47.2
2590 Female, age 75, unknown 45.7
2583 Male, age 75, right hemisphere 43.7
2241 Male, age 72, unknown 36.1
2409 Female, age 72, unknown 34.3
Superior colliculus
nTPM: 49.6
1995 Male, age 72, unknown 57.1
1913 Female, age 42, unknown 56.8
2587 Male, age 74, left hemisphere 54.7
1796 Male, age 53, unknown 50.4
2664 Male, age 75, both hemispheres 49.8
2261 Male, age 18, unknown 48.7
1895 Male, age 76, right hemisphere 47.8
1839 Male, age 51, unknown 45.0
2087 Female, age 72, unknown 43.1
2668 Female, age 75, unknown 43.0
Ventral tegmental area
nTPM: 49.3
2223 Female, age 72, unknown 53.7
1915 Female, age 42, unknown 53.4
2410 Female, age 72, unknown 48.8
2021 Male, age 53, unknown 48.0
2218 Male, age 76, both hemispheres 47.4
1942 Male, age 51, unknown 44.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.0
Samples: 139

Max nTPM: 237.9
Min nTPM: 54.5
Std nTPM: 26.3
Median nTPM: 104.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 237.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 190.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 182.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 167.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 163.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 159.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 156.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 153.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 153.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 153.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 152.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.9
FF:10158-103A5 76 years, female 140.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.5
Samples: 4

Max nTPM: 85.4
Min nTPM: 60.0
Sample A Female 85.4
Sample B Female 60.0
Sample C Male 67.1
Sample D Male 65.4
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 105.9
Min nTPM: 49.9
Sample A Female 105.9
Sample B Female 68.8
Sample C Male 58.9
Sample D Male 49.9
Periaqueductal gray
nTPM: 55.6
Samples: 3

Max nTPM: 59.9
Min nTPM: 51.1
Sample B Female 55.8
Sample C Male 59.9
Sample D Male 51.1
Superior colliculi
nTPM: 71.5
Samples: 4

Max nTPM: 83.5
Min nTPM: 63.5
Sample A Female 83.5
Sample B Female 63.5
Sample C Male 72.8
Sample D Male 66.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.6
Samples: 4

Max nTPM: 119.8
Min nTPM: 90.4
Sample A Male 119.8
Sample B Male 102.1
Sample C Female 90.4
Sample D Female 106.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
71992097 Antisense, RP_051012_04_B07, Mouse strain C57BL/6J (56 days, male) 6.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org