MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:20.0 nTPM
GTEx:12.8 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:31.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
1827 Male, age 72, unknown 17.5
2219 Male, age 76, both hemispheres 17.3
1870 Female, age 42, unknown 16.4
2019 Male, age 18, unknown 15.4
2828 Female, age 72, unknown 15.4
2666 Male, age 74, left hemisphere 15.3
1833 Male, age 53, unknown 15.2
2411 Female, age 72, unknown 15.0
1830 Male, age 51, unknown 12.2
2586 Male, age 75, left hemisphere 10.7
Dorsal raphe nucleus
nTPM: 15.6
2047 Male, age 72, unknown 16.8
2298 Female, age 72, unknown 16.8
2750 Male, age 76, both hemispheres 16.1
1828 Male, age 53, unknown 15.0
2016 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 15.7
2097 Female, age 72, unknown 16.9
1848 Female, age 42, unknown 15.7
1890 Male, age 53, unknown 15.3
2849 Male, age 72, unknown 15.1
Median raphe nucleus
nTPM: 20.0
2220 Male, age 76, midline 20.0
Periaquaductal grey, anterior
nTPM: 15.9
1947 Male, age 18, unknown 18.0
1795 Male, age 51, unknown 16.0
2502 Female, age 75, unknown 13.6
Periaquaductal grey, dorsal
nTPM: 13.7
1840 Male, age 53, unknown 15.3
2850 Male, age 76, both hemispheres 15.3
1831 Male, age 72, unknown 12.9
2464 Female, age 72, unknown 11.5
Periaquaductal grey, lateral
nTPM: 16.0
2272 Male, age 74, both hemispheres 17.5
2053 Male, age 18, unknown 16.0
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 17.5
1816 Male, age 51, unknown 21.1
1944 Female, age 72, unknown 19.9
1817 Female, age 42, unknown 18.8
2007 Male, age 72, unknown 18.8
2273 Male, age 74, both hemispheres 17.7
2667 Female, age 75, unknown 17.6
1815 Male, age 53, unknown 17.1
2224 Female, age 72, unknown 16.5
2407 Male, age 75, both hemispheres 15.5
2825 Male, age 18, unknown 14.6
2316 Male, age 76, right hemisphere 14.5
Red nucleus
nTPM: 14.5
1821 Female, age 72, unknown 17.6
2725 Female, age 75, unknown 16.6
2588 Male, age 74, left hemisphere 16.5
1865 Male, age 51, unknown 15.1
2823 Male, age 76, right hemisphere 15.0
2785 Male, age 18, unknown 14.4
1954 Female, age 42, unknown 13.6
2584 Male, age 75, left hemisphere 13.6
2769 Male, age 72, unknown 13.5
2503 Female, age 72, unknown 12.8
1904 Male, age 53, unknown 12.7
2227 Male, age 72, unknown 12.7
Substantia nigra
nTPM: 16.9
1916 Female, age 42, unknown 21.2
1851 Male, age 51, unknown 19.5
1889 Female, age 72, unknown 19.4
1941 Male, age 53, unknown 18.1
2241 Male, age 72, unknown 18.0
2665 Male, age 74, both hemispheres 16.8
2699 Male, age 18, unknown 15.7
2590 Female, age 75, unknown 15.4
2583 Male, age 75, right hemisphere 13.7
2409 Female, age 72, unknown 11.2
Superior colliculus
nTPM: 15.6
2087 Female, age 72, unknown 18.1
1796 Male, age 53, unknown 16.8
2261 Male, age 18, unknown 16.7
2668 Female, age 75, unknown 16.7
1895 Male, age 76, right hemisphere 16.3
1913 Female, age 42, unknown 15.7
2587 Male, age 74, left hemisphere 14.7
1839 Male, age 51, unknown 14.6
1995 Male, age 72, unknown 14.0
2664 Male, age 75, both hemispheres 12.5
Ventral tegmental area
nTPM: 16.4
2218 Male, age 76, both hemispheres 19.3
2410 Female, age 72, unknown 17.5
1915 Female, age 42, unknown 17.4
2223 Female, age 72, unknown 15.2
2021 Male, age 53, unknown 14.9
1942 Male, age 51, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 31.2
Min nTPM: 5.3
Std nTPM: 3.7
Median nTPM: 12.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 21.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 20.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 20.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 20.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 19.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 18.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 18.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.4
FF:10158-103A5 76 years, female 39.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 24.4
Min nTPM: 14.6
Sample A Female 20.8
Sample B Female 15.2
Sample C Male 24.4
Sample D Male 14.6
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 17.2
Sample A Female 18.0
Sample B Female 17.2
Sample C Male 21.4
Sample D Male 22.6
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 22.8
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 22.8
Sample D Male 18.4
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 21.9
Min nTPM: 12.2
Sample A Female 18.8
Sample B Female 12.2
Sample C Male 21.9
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 33.4
Min nTPM: 29.5
Sample A Male 29.5
Sample B Male 33.4
Sample C Female 32.6
Sample D Female 30.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69133719 Antisense, RP_050321_02_B03, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org