HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:42.1 nTPM
GTEx:43.7 nTPM
FANTOM5:62.4 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:33.7 nTPM
Allen mouse:11.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA061593Antibody CAB016327
Glial cells HighMedium
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Hippocampus
nTPM: 38.2
1855 Male, age 76, left hemisphere 47.6
2148 Female, age 91, left hemisphere 43.7
2621 Female, age 67, right hemisphere 37.2
1911 Female, age 85, right hemisphere 35.5
1898 Male, age 80, left hemisphere 33.7
2529 Female, age 94, left hemisphere 31.8
Dentate gyrus
nTPM: 39.6
2010 Male, age 76, both hemispheres 47.7
2531 Female, age 67, both hemispheres 46.7
2246 Female, age 85, both hemispheres 39.2
1927 Female, age 91, both hemispheres 36.7
2528 Male, age 74, both hemispheres 36.5
2530 Female, age 94, left hemisphere 30.7
Entorhinal gyrus
nTPM: 36.8
1787 Male, age 76, left hemisphere 38.6
2613 Female, age 94, left hemisphere 38.3
2764 Male, age 80, right hemisphere 37.9
2117 Female, age 91, right hemisphere 37.4
2686 Male, age 75, right hemisphere 36.0
1938 Female, age 85, left hemisphere 32.8
Hippocampus, CA1
nTPM: 42.1
2045 Male, age 76, both hemispheres 66.5
2082 Female, age 91, right hemisphere 40.0
1873 Female, age 85, both hemispheres 37.6
2527 Male, age 74, both hemispheres 35.4
2749 Male, age 80, left hemisphere 30.9
Hippocampus, CA2
nTPM: 38.1
1892 Male, age 76, both hemispheres 50.6
1940 Female, age 85, left hemisphere 41.0
2113 Female, age 91, right hemisphere 37.6
2437 Female, age 94, left hemisphere 34.7
2249 Male, age 74, both hemispheres 34.6
1963 Male, age 80, left hemisphere 29.8
Hippocampus, CA3
nTPM: 40.4
1867 Male, age 76, both hemispheres 49.8
2620 Female, age 94, left hemisphere 44.6
2436 Male, age 74, both hemispheres 42.0
2861 Female, age 67, both hemispheres 37.1
1891 Female, age 85, both hemispheres 36.6
2137 Male, age 80, left hemisphere 32.2
Parahippocampal cortex
nTPM: 39.0
2018 Male, age 76, both hemispheres 53.7
2693 Female, age 94, both hemispheres 40.9
2622 Female, age 67, right hemisphere 38.7
2532 Female, age 72, left hemisphere 38.2
1933 Female, age 85, both hemispheres 38.0
2250 Female, age 67, right hemisphere 37.5
1850 Male, age 80, both hemispheres 36.5
2245 Female, age 91, both hemispheres 36.2
2692 Male, age 74, both hemispheres 35.8
1990 Female, age 91, right hemisphere 34.8
Perirhinal gyrus
nTPM: 39.0
2848 Male, age 76, right hemisphere 42.6
2521 Female, age 94, right hemisphere 41.3
1841 Female, age 85, right hemisphere 39.5
1847 Female, age 91, left hemisphere 36.7
1794 Male, age 80, right hemisphere 35.1
Subiculum
nTPM: 39.7
2042 Male, age 76, both hemispheres 45.6
2438 Female, age 94, left hemisphere 42.2
2729 Female, age 91, right hemisphere 41.8
1977 Female, age 85, both hemispheres 37.0
2619 Male, age 74, both hemispheres 36.9
1901 Male, age 80, both hemispheres 34.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.7
Samples: 197

Max nTPM: 168.1
Min nTPM: 16.6
Std nTPM: 14.6
Median nTPM: 41.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 168.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 97.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 88.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 85.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 75.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 73.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 70.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 68.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 68.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 66.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 65.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.4
FF:10153-102I9 76 years, female 76.0
FF:10169-103B7 60 years, female 48.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.2
Pig sample Sample description nTPM
Subiculum
nTPM: 17.9
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.0
Sample A Female 17.0
Sample B Female 17.8
Sample C Male 17.4
Sample D Male 19.2
Dorsal hippocampus
nTPM: 19.6
Samples: 4

Max nTPM: 22.2
Min nTPM: 18.2
Sample A Female 19.0
Sample B Female 18.2
Sample C Male 18.8
Sample D Male 22.2
Entorhinal cortex
nTPM: 17.2
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.5
Sample A Female 18.0
Sample B Female 15.5
Sample C Male 16.1
Sample D Male 19.0
Ventral hippocampus
nTPM: 20.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.8
Sample A Female 18.9
Sample B Female 17.8
Sample C Male 21.2
Sample D Male 23.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.7
Samples: 4

Max nTPM: 32.9
Min nTPM: 22.6
Sample A Male 26.3
Sample B Male 32.9
Sample C Female 32.8
Sample D Female 22.6
Hippocampal formation
nTPM: 33.7
Samples: 4

Max nTPM: 36.2
Min nTPM: 30.1
Sample A Male 32.5
Sample B Male 36.0
Sample C Female 30.1
Sample D Female 36.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.6
356089 Antisense, RP_040617_02_C05, Mouse strain C57BL/6J (56 days, male) 13.1
71608387 Antisense, RP_050927_01_F04, Mouse strain C57BL/6J (56 days, male) 10.1

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