MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:100.2 nTPM
GTEx:4.8 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:667.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2666 Male, age 74, left hemisphere 52.6
1870 Female, age 42, unknown 51.7
1827 Male, age 72, unknown 14.4
1833 Male, age 53, unknown 14.1
1830 Male, age 51, unknown 11.2
2411 Female, age 72, unknown 10.9
2828 Female, age 72, unknown 9.5
2219 Male, age 76, both hemispheres 8.1
2586 Male, age 75, left hemisphere 6.0
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 26.2
2047 Male, age 72, unknown 47.2
2298 Female, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 20.6
2016 Female, age 72, unknown 13.4
1828 Male, age 53, unknown 9.9
Inferior colliculus
nTPM: 10.4
2849 Male, age 72, unknown 13.3
1890 Male, age 53, unknown 12.5
2097 Female, age 72, unknown 8.3
1848 Female, age 42, unknown 7.6
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Periaquaductal grey, anterior
nTPM: 100.2
1947 Male, age 18, unknown 210.2
1795 Male, age 51, unknown 78.8
2502 Female, age 75, unknown 11.7
Periaquaductal grey, dorsal
nTPM: 25.9
2850 Male, age 76, both hemispheres 35.3
1840 Male, age 53, unknown 31.6
2464 Female, age 72, unknown 19.0
1831 Male, age 72, unknown 17.7
Periaquaductal grey, lateral
nTPM: 25.6
2053 Male, age 18, unknown 31.8
2140 Male, age 76, both hemispheres 26.7
2272 Male, age 74, both hemispheres 18.2
Pretectal area
nTPM: 16.2
2224 Female, age 72, unknown 81.3
2825 Male, age 18, unknown 48.5
2316 Male, age 76, right hemisphere 12.6
2273 Male, age 74, both hemispheres 11.3
2667 Female, age 75, unknown 6.3
2407 Male, age 75, both hemispheres 5.5
1816 Male, age 51, unknown 3.5
1944 Female, age 72, unknown 2.7
2007 Male, age 72, unknown 2.7
1817 Female, age 42, unknown 2.4
1815 Male, age 53, unknown 1.8
Red nucleus
nTPM: 2.4
2725 Female, age 75, unknown 7.6
2584 Male, age 75, left hemisphere 6.5
2588 Male, age 74, left hemisphere 3.4
2769 Male, age 72, unknown 3.2
2227 Male, age 72, unknown 2.9
2503 Female, age 72, unknown 2.0
1954 Female, age 42, unknown 1.2
2823 Male, age 76, right hemisphere 1.2
1821 Female, age 72, unknown 0.8
1865 Male, age 51, unknown 0.3
1904 Male, age 53, unknown 0.3
2785 Male, age 18, unknown 0.1
Substantia nigra
nTPM: 2.7
2590 Female, age 75, unknown 6.4
2665 Male, age 74, both hemispheres 4.3
1889 Female, age 72, unknown 3.2
2241 Male, age 72, unknown 3.0
2583 Male, age 75, right hemisphere 2.5
1941 Male, age 53, unknown 2.2
1851 Male, age 51, unknown 2.0
2409 Female, age 72, unknown 1.7
1916 Female, age 42, unknown 0.8
2699 Male, age 18, unknown 0.7
Superior colliculus
nTPM: 8.0
1839 Male, age 51, unknown 19.4
2261 Male, age 18, unknown 16.0
1796 Male, age 53, unknown 11.4
2587 Male, age 74, left hemisphere 7.6
2664 Male, age 75, both hemispheres 6.8
1895 Male, age 76, right hemisphere 6.1
2668 Female, age 75, unknown 5.2
2087 Female, age 72, unknown 3.5
1913 Female, age 42, unknown 2.4
1995 Male, age 72, unknown 1.8
Ventral tegmental area
nTPM: 21.6
2021 Male, age 53, unknown 66.4
1915 Female, age 42, unknown 24.8
1942 Male, age 51, unknown 17.6
2218 Male, age 76, both hemispheres 11.0
2223 Female, age 72, unknown 8.0
2410 Female, age 72, unknown 2.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.8
Samples: 139

Max nTPM: 40.3
Min nTPM: 0.6
Std nTPM: 5.7
Median nTPM: 2.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 40.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 20.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 19.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 18.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 16.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 16.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 13.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 13.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 12.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 667.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 667.7
Samples: 4

Max nTPM: 1199.2
Min nTPM: 71.9
Sample A Female 960.7
Sample B Female 439.1
Sample C Male 1199.2
Sample D Male 71.9
Midbrain
nTPM: 261.8
Samples: 4

Max nTPM: 431.3
Min nTPM: 61.3
Sample A Female 61.3
Sample B Female 431.3
Sample C Male 224.1
Sample D Male 330.4
Periaqueductal gray
nTPM: 383.8
Samples: 3

Max nTPM: 530.8
Min nTPM: 309.8
Sample B Female 309.8
Sample C Male 530.8
Sample D Male 310.9
Superior colliculi
nTPM: 312.8
Samples: 4

Max nTPM: 372.4
Min nTPM: 276.7
Sample A Female 372.4
Sample B Female 298.8
Sample C Male 276.7
Sample D Male 303.4

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