HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:98.5 nTPM
GTEx:10.8 nTPM
FANTOM5:231.1 Scaled Tags Per Million
Pig:115.0 nTPM
Mouse:10.4 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006111Antibody HPA008884
Glial cells HighMedium
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 98.5
Sample id Sample description nTPM
Hippocampus
nTPM: 98.5
2148 Female, age 91, left hemisphere 111.1
2529 Female, age 94, left hemisphere 107.6
1855 Male, age 76, left hemisphere 102.4
1911 Female, age 85, right hemisphere 94.5
2621 Female, age 67, right hemisphere 89.0
1898 Male, age 80, left hemisphere 86.2
Dentate gyrus
nTPM: 87.6
2246 Female, age 85, both hemispheres 96.1
2531 Female, age 67, both hemispheres 88.2
2528 Male, age 74, both hemispheres 87.6
2010 Male, age 76, both hemispheres 87.1
2530 Female, age 94, left hemisphere 85.9
1927 Female, age 91, both hemispheres 80.8
Entorhinal gyrus
nTPM: 87.8
2117 Female, age 91, right hemisphere 109.6
2686 Male, age 75, right hemisphere 95.9
1938 Female, age 85, left hemisphere 95.3
2764 Male, age 80, right hemisphere 77.4
1787 Male, age 76, left hemisphere 75.0
2613 Female, age 94, left hemisphere 73.3
Hippocampus, CA1
nTPM: 89.8
2527 Male, age 74, both hemispheres 102.3
1873 Female, age 85, both hemispheres 99.5
2045 Male, age 76, both hemispheres 99.0
2082 Female, age 91, right hemisphere 89.8
2749 Male, age 80, left hemisphere 58.7
Hippocampus, CA2
nTPM: 79.7
2113 Female, age 91, right hemisphere 91.2
2249 Male, age 74, both hemispheres 85.9
1963 Male, age 80, left hemisphere 84.6
1940 Female, age 85, left hemisphere 81.0
2437 Female, age 94, left hemisphere 73.3
1892 Male, age 76, both hemispheres 61.9
Hippocampus, CA3
nTPM: 82.8
2861 Female, age 67, both hemispheres 103.0
1891 Female, age 85, both hemispheres 99.8
2620 Female, age 94, left hemisphere 93.8
2436 Male, age 74, both hemispheres 83.2
1867 Male, age 76, both hemispheres 63.2
2137 Male, age 80, left hemisphere 53.6
Parahippocampal cortex
nTPM: 82.3
2692 Male, age 74, both hemispheres 109.3
2622 Female, age 67, right hemisphere 86.8
1850 Male, age 80, both hemispheres 85.2
2250 Female, age 67, right hemisphere 83.4
1933 Female, age 85, both hemispheres 83.2
2245 Female, age 91, both hemispheres 82.6
1990 Female, age 91, right hemisphere 79.7
2018 Male, age 76, both hemispheres 76.4
2532 Female, age 72, left hemisphere 69.9
2693 Female, age 94, both hemispheres 66.9
Perirhinal gyrus
nTPM: 68.5
1847 Female, age 91, left hemisphere 80.8
2848 Male, age 76, right hemisphere 69.9
1841 Female, age 85, right hemisphere 64.8
1794 Male, age 80, right hemisphere 64.1
2521 Female, age 94, right hemisphere 62.7
Subiculum
nTPM: 91.0
2729 Female, age 91, right hemisphere 114.0
2619 Male, age 74, both hemispheres 95.7
2438 Female, age 94, left hemisphere 93.0
2042 Male, age 76, both hemispheres 89.7
1977 Female, age 85, both hemispheres 77.4
1901 Male, age 80, both hemispheres 76.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.8
Samples: 197

Max nTPM: 20.9
Min nTPM: 4.1
Std nTPM: 3.1
Median nTPM: 10.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 20.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 19.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 19.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 18.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 18.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 17.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 17.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 17.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 16.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 15.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 15.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 231.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 231.1
FF:10153-102I9 76 years, female 238.0
FF:10169-103B7 60 years, female 224.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 115.0
Pig sample Sample description nTPM
Subiculum
nTPM: 103.6
Samples: 4

Max nTPM: 112.3
Min nTPM: 95.1
Sample A Female 112.3
Sample B Female 103.2
Sample C Male 103.6
Sample D Male 95.1
Dorsal hippocampus
nTPM: 115.0
Samples: 4

Max nTPM: 122.3
Min nTPM: 109.0
Sample A Female 114.6
Sample B Female 109.0
Sample C Male 114.0
Sample D Male 122.3
Entorhinal cortex
nTPM: 76.3
Samples: 4

Max nTPM: 83.3
Min nTPM: 64.9
Sample A Female 77.7
Sample B Female 64.9
Sample C Male 83.3
Sample D Male 79.1
Ventral hippocampus
nTPM: 111.1
Samples: 4

Max nTPM: 123.7
Min nTPM: 101.8
Sample A Female 105.8
Sample B Female 112.9
Sample C Male 123.7
Sample D Male 101.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.1
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.4
Sample A Male 9.0
Sample B Male 7.4
Sample C Female 8.4
Sample D Female 7.4
Hippocampal formation
nTPM: 10.4
Samples: 4

Max nTPM: 11.9
Min nTPM: 8.8
Sample A Male 9.1
Sample B Male 11.9
Sample C Female 11.9
Sample D Female 8.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
70919059 Antisense, RP_050712_04_A11, Mouse strain C57BL/6J (56 days, male) 6.4
1239 Antisense, RP_Baylor_102928, Mouse strain C57BL/6J (56 days, male) 1.5
1240 Antisense, RP_Baylor_102928, Mouse strain C57BL/6J (56 days, male) 1.2

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