MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:27.9 nTPM
GTEx:9.4 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:39.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
1830 Male, age 51, unknown 26.3
2411 Female, age 72, unknown 26.0
2219 Male, age 76, both hemispheres 24.4
2828 Female, age 72, unknown 24.1
1833 Male, age 53, unknown 23.5
2586 Male, age 75, left hemisphere 23.1
1870 Female, age 42, unknown 21.7
2666 Male, age 74, left hemisphere 21.6
2019 Male, age 18, unknown 21.4
1827 Male, age 72, unknown 20.7
Dorsal raphe nucleus
nTPM: 22.1
2750 Male, age 76, both hemispheres 26.4
2016 Female, age 72, unknown 23.5
2047 Male, age 72, unknown 21.4
2298 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 19.2
Inferior colliculus
nTPM: 20.3
1890 Male, age 53, unknown 22.9
2849 Male, age 72, unknown 19.8
2097 Female, age 72, unknown 19.5
1848 Female, age 42, unknown 19.0
Median raphe nucleus
nTPM: 22.9
2220 Male, age 76, midline 22.9
Periaquaductal grey, anterior
nTPM: 21.4
2502 Female, age 75, unknown 22.5
1947 Male, age 18, unknown 22.1
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 21.2
2464 Female, age 72, unknown 23.1
1840 Male, age 53, unknown 22.0
1831 Male, age 72, unknown 21.7
2850 Male, age 76, both hemispheres 18.1
Periaquaductal grey, lateral
nTPM: 18.5
2272 Male, age 74, both hemispheres 20.2
2053 Male, age 18, unknown 18.4
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 19.9
1815 Male, age 53, unknown 23.2
2407 Male, age 75, both hemispheres 21.5
2825 Male, age 18, unknown 21.3
2273 Male, age 74, both hemispheres 20.5
2667 Female, age 75, unknown 20.2
2316 Male, age 76, right hemisphere 19.7
2007 Male, age 72, unknown 19.6
1817 Female, age 42, unknown 19.3
2224 Female, age 72, unknown 19.2
1816 Male, age 51, unknown 17.7
1944 Female, age 72, unknown 17.2
Red nucleus
nTPM: 24.8
2503 Female, age 72, unknown 28.5
2725 Female, age 75, unknown 27.5
2588 Male, age 74, left hemisphere 27.0
1904 Male, age 53, unknown 25.8
2823 Male, age 76, right hemisphere 25.4
2769 Male, age 72, unknown 24.8
1865 Male, age 51, unknown 24.7
1821 Female, age 72, unknown 24.6
2584 Male, age 75, left hemisphere 23.2
1954 Female, age 42, unknown 22.5
2227 Male, age 72, unknown 22.1
2785 Male, age 18, unknown 21.0
Substantia nigra
nTPM: 27.9
2409 Female, age 72, unknown 34.1
2241 Male, age 72, unknown 34.0
1916 Female, age 42, unknown 33.3
2699 Male, age 18, unknown 31.2
1851 Male, age 51, unknown 30.1
2583 Male, age 75, right hemisphere 27.7
1889 Female, age 72, unknown 23.2
2590 Female, age 75, unknown 22.8
1941 Male, age 53, unknown 21.5
2665 Male, age 74, both hemispheres 21.4
Superior colliculus
nTPM: 22.0
1913 Female, age 42, unknown 23.9
1995 Male, age 72, unknown 22.9
2587 Male, age 74, left hemisphere 22.7
2261 Male, age 18, unknown 22.2
2664 Male, age 75, both hemispheres 22.2
2668 Female, age 75, unknown 22.1
1895 Male, age 76, right hemisphere 21.9
1796 Male, age 53, unknown 21.6
1839 Male, age 51, unknown 20.9
2087 Female, age 72, unknown 19.6
Ventral tegmental area
nTPM: 26.2
1915 Female, age 42, unknown 28.2
1942 Male, age 51, unknown 27.2
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 25.9
2410 Female, age 72, unknown 25.1
2223 Female, age 72, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 19.1
Min nTPM: 2.7
Std nTPM: 2.7
Median nTPM: 9.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 14.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 13.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 13.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 40.7
Min nTPM: 23.0
Sample A Female 40.7
Sample B Female 28.9
Sample C Male 34.4
Sample D Male 23.0
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 44.8
Min nTPM: 31.7
Sample A Female 44.8
Sample B Female 31.7
Sample C Male 43.9
Sample D Male 31.8
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 25.0
Min nTPM: 22.0
Sample B Female 24.9
Sample C Male 25.0
Sample D Male 22.0
Superior colliculi
nTPM: 32.3
Samples: 4

Max nTPM: 35.5
Min nTPM: 29.0
Sample A Female 35.5
Sample B Female 29.7
Sample C Male 35.1
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 40.2
Min nTPM: 38.4
Sample A Male 39.3
Sample B Male 38.8
Sample C Female 40.2
Sample D Female 38.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69352920 Antisense, RP_050412_01_D07, Mouse strain C57BL/6J (56 days, male) 2.7

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