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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
37.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 37.3
Samples: 152
Max nTPM: 83.4
Min nTPM: 18.6
Std nTPM: 10.5
Median nTPM: 35.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
83.4
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
79.2
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
71.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
62.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
61.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
61.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
60.8
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
60.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
56.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
55.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
53.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
53.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
52.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
52.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
52.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
52.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
52.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
52.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
49.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
47.6
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
47.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
47.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
46.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
45.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
45.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
43.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
43.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
43.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
43.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
43.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
43.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
42.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
42.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
42.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
41.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
41.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
41.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
41.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
41.2
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
41.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
41.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
40.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
40.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
40.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
39.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
39.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
39.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
39.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
39.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
39.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
39.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
38.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
38.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
38.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
38.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
38.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
37.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
37.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
37.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
37.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
37.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
37.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
37.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
36.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
36.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
36.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
36.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
36.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
36.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
35.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
35.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
35.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
35.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
35.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
35.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
35.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
35.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
35.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
35.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
35.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
35.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
35.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
34.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
34.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
33.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
33.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
33.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
33.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
33.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
33.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
32.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
32.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
32.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
32.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
32.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
32.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
32.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
32.5
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
32.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
32.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
32.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
32.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
32.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
32.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
32.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
31.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
31.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
31.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
31.4
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
31.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
31.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
30.9
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
30.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
30.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
30.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
30.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
30.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
30.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
30.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
30.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
30.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
30.0
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
29.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
29.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
29.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
29.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
29.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
29.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
29.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
28.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
28.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
27.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
27.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
27.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
27.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
27.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
27.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
27.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
26.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
26.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
25.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
24.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
24.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
24.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
23.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
23.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
23.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
23.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
21.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
21.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
19.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
18.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
41.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 41.7
Samples: 4
Max nTPM: 47.6
Min nTPM: 36.4
Sample A
Male
41.5
Sample B
Male
36.4
Sample C
Female
47.6
Sample D
Female
41.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.