MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.5 nTPM
HPA Brain:34.7 nTPM
GTEx:2.5 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:6.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2019 Male, age 18, unknown 28.9
1827 Male, age 72, unknown 20.1
2828 Female, age 72, unknown 17.1
2666 Male, age 74, left hemisphere 14.7
2586 Male, age 75, left hemisphere 10.2
1870 Female, age 42, unknown 10.1
2219 Male, age 76, both hemispheres 9.2
2411 Female, age 72, unknown 9.1
1833 Male, age 53, unknown 8.8
1830 Male, age 51, unknown 6.7
Dorsal raphe nucleus
nTPM: 8.8
2298 Female, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 11.4
1828 Male, age 53, unknown 7.1
2047 Male, age 72, unknown 7.0
2016 Female, age 72, unknown 4.2
Inferior colliculus
nTPM: 8.4
2097 Female, age 72, unknown 11.4
1848 Female, age 42, unknown 9.2
2849 Male, age 72, unknown 7.9
1890 Male, age 53, unknown 5.1
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 14.7
1795 Male, age 51, unknown 25.6
2502 Female, age 75, unknown 11.6
1947 Male, age 18, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 12.3
1831 Male, age 72, unknown 16.8
1840 Male, age 53, unknown 11.6
2464 Female, age 72, unknown 11.0
2850 Male, age 76, both hemispheres 9.8
Periaquaductal grey, lateral
nTPM: 13.8
2272 Male, age 74, both hemispheres 15.8
2053 Male, age 18, unknown 14.7
2140 Male, age 76, both hemispheres 10.8
Pretectal area
nTPM: 34.7
1816 Male, age 51, unknown 73.6
1817 Female, age 42, unknown 57.4
1815 Male, age 53, unknown 54.9
2007 Male, age 72, unknown 54.6
1944 Female, age 72, unknown 51.7
2667 Female, age 75, unknown 27.0
2273 Male, age 74, both hemispheres 18.0
2224 Female, age 72, unknown 15.3
2316 Male, age 76, right hemisphere 10.5
2407 Male, age 75, both hemispheres 10.4
2825 Male, age 18, unknown 8.8
Red nucleus
nTPM: 8.8
2785 Male, age 18, unknown 31.5
2725 Female, age 75, unknown 14.5
2503 Female, age 72, unknown 9.9
2588 Male, age 74, left hemisphere 9.0
2823 Male, age 76, right hemisphere 7.6
2584 Male, age 75, left hemisphere 7.5
1904 Male, age 53, unknown 5.9
1865 Male, age 51, unknown 4.5
2769 Male, age 72, unknown 4.3
1954 Female, age 42, unknown 4.0
2227 Male, age 72, unknown 3.7
1821 Female, age 72, unknown 3.3
Substantia nigra
nTPM: 8.4
1889 Female, age 72, unknown 30.0
2665 Male, age 74, both hemispheres 10.4
2409 Female, age 72, unknown 8.4
2583 Male, age 75, right hemisphere 8.1
1941 Male, age 53, unknown 6.9
1916 Female, age 42, unknown 6.0
2590 Female, age 75, unknown 5.5
1851 Male, age 51, unknown 4.6
2241 Male, age 72, unknown 2.5
2699 Male, age 18, unknown 1.5
Superior colliculus
nTPM: 21.4
2087 Female, age 72, unknown 42.7
2261 Male, age 18, unknown 29.4
1995 Male, age 72, unknown 29.3
1913 Female, age 42, unknown 27.7
1796 Male, age 53, unknown 26.2
2664 Male, age 75, both hemispheres 13.6
2668 Female, age 75, unknown 12.2
1895 Male, age 76, right hemisphere 11.8
2587 Male, age 74, left hemisphere 11.0
1839 Male, age 51, unknown 10.4
Ventral tegmental area
nTPM: 7.0
2223 Female, age 72, unknown 8.3
1942 Male, age 51, unknown 8.2
2218 Male, age 76, both hemispheres 7.4
2410 Female, age 72, unknown 6.9
2021 Male, age 53, unknown 6.6
1915 Female, age 42, unknown 4.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.5
Samples: 139

Max nTPM: 8.6
Min nTPM: 0.0
Std nTPM: 1.6
Median nTPM: 2.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 8.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 6.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 6.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 6.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 6.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 5.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 5.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 5.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 5.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 5.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.6
Samples: 4

Max nTPM: 8.1
Min nTPM: 4.9
Sample A Female 8.1
Sample B Female 4.9
Sample C Male 7.4
Sample D Male 5.9
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 83.9
Min nTPM: 5.7
Sample A Female 6.1
Sample B Female 5.7
Sample C Male 83.9
Sample D Male 11.1
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.6
Sample B Female 8.6
Sample C Male 10.0
Sample D Male 9.7
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 56.9
Min nTPM: 8.6
Sample A Female 8.6
Sample B Female 19.0
Sample C Male 56.9
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.0
Sample A Male 7.7
Sample B Male 5.0
Sample C Female 6.7
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70805896 Antisense, RP_050725_02_E02, Mouse strain C57BL/6J (56 days, male) 1.2
68162201 Antisense, RP_041122_01_F11, Mouse strain C57BL/6J (56 days, male) 0.6

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