MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.7 nTPM
HPA Brain:42.1 nTPM
GTEx:72.7 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:129.6 nTPM
Mouse:69.2 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2411 Female, age 72, unknown 44.7
1870 Female, age 42, unknown 43.1
1833 Male, age 53, unknown 35.2
1827 Male, age 72, unknown 34.0
1830 Male, age 51, unknown 33.0
2019 Male, age 18, unknown 30.1
2219 Male, age 76, both hemispheres 29.4
2828 Female, age 72, unknown 26.5
2666 Male, age 74, left hemisphere 23.1
2586 Male, age 75, left hemisphere 21.8
Dorsal raphe nucleus
nTPM: 42.1
2298 Female, age 72, unknown 52.6
2750 Male, age 76, both hemispheres 40.8
2016 Female, age 72, unknown 39.7
2047 Male, age 72, unknown 38.9
1828 Male, age 53, unknown 38.7
Inferior colliculus
nTPM: 34.0
2097 Female, age 72, unknown 41.8
1848 Female, age 42, unknown 33.0
2849 Male, age 72, unknown 31.2
1890 Male, age 53, unknown 30.2
Median raphe nucleus
nTPM: 40.5
2220 Male, age 76, midline 40.5
Periaquaductal grey, anterior
nTPM: 36.2
1947 Male, age 18, unknown 40.4
2502 Female, age 75, unknown 34.4
1795 Male, age 51, unknown 33.8
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 39.1
1840 Male, age 53, unknown 35.8
2464 Female, age 72, unknown 30.6
1831 Male, age 72, unknown 29.9
Periaquaductal grey, lateral
nTPM: 37.8
2272 Male, age 74, both hemispheres 49.6
2053 Male, age 18, unknown 32.5
2140 Male, age 76, both hemispheres 31.4
Pretectal area
nTPM: 34.2
2273 Male, age 74, both hemispheres 44.4
2224 Female, age 72, unknown 42.5
2667 Female, age 75, unknown 39.4
2825 Male, age 18, unknown 35.8
1944 Female, age 72, unknown 34.0
1817 Female, age 42, unknown 32.5
2007 Male, age 72, unknown 31.7
1815 Male, age 53, unknown 31.1
1816 Male, age 51, unknown 29.7
2407 Male, age 75, both hemispheres 27.6
2316 Male, age 76, right hemisphere 27.2
Red nucleus
nTPM: 31.0
1821 Female, age 72, unknown 40.0
1954 Female, age 42, unknown 34.6
2725 Female, age 75, unknown 34.1
1904 Male, age 53, unknown 33.4
2823 Male, age 76, right hemisphere 32.5
2227 Male, age 72, unknown 31.8
1865 Male, age 51, unknown 31.4
2503 Female, age 72, unknown 31.3
2769 Male, age 72, unknown 29.9
2785 Male, age 18, unknown 29.2
2584 Male, age 75, left hemisphere 21.6
2588 Male, age 74, left hemisphere 21.6
Substantia nigra
nTPM: 36.4
2241 Male, age 72, unknown 50.6
2409 Female, age 72, unknown 47.0
1916 Female, age 42, unknown 39.5
1851 Male, age 51, unknown 38.9
1889 Female, age 72, unknown 37.2
1941 Male, age 53, unknown 37.2
2699 Male, age 18, unknown 34.8
2590 Female, age 75, unknown 30.9
2665 Male, age 74, both hemispheres 27.6
2583 Male, age 75, right hemisphere 20.7
Superior colliculus
nTPM: 31.6
2587 Male, age 74, left hemisphere 43.0
1839 Male, age 51, unknown 33.9
1895 Male, age 76, right hemisphere 33.4
2261 Male, age 18, unknown 33.2
1796 Male, age 53, unknown 32.3
1913 Female, age 42, unknown 32.2
2668 Female, age 75, unknown 28.8
2087 Female, age 72, unknown 28.1
1995 Male, age 72, unknown 27.4
2664 Male, age 75, both hemispheres 23.5
Ventral tegmental area
nTPM: 36.9
2223 Female, age 72, unknown 41.8
2410 Female, age 72, unknown 38.9
2218 Male, age 76, both hemispheres 36.6
1915 Female, age 42, unknown 35.6
1942 Male, age 51, unknown 34.6
2021 Male, age 53, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.7
Samples: 139

Max nTPM: 127.3
Min nTPM: 44.9
Std nTPM: 13.3
Median nTPM: 71.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 108.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 105.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 101.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 100.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 98.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 98.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 96.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 96.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.0
FF:10158-103A5 76 years, female 78.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.2
Samples: 4

Max nTPM: 174.8
Min nTPM: 91.5
Sample A Female 174.8
Sample B Female 104.2
Sample C Male 130.4
Sample D Male 91.5
Midbrain
nTPM: 129.1
Samples: 4

Max nTPM: 137.8
Min nTPM: 124.7
Sample A Female 137.8
Sample B Female 127.4
Sample C Male 124.7
Sample D Male 126.6
Periaqueductal gray
nTPM: 111.0
Samples: 3

Max nTPM: 121.6
Min nTPM: 98.1
Sample B Female 98.1
Sample C Male 121.6
Sample D Male 113.2
Superior colliculi
nTPM: 129.6
Samples: 4

Max nTPM: 155.9
Min nTPM: 89.4
Sample A Female 155.9
Sample B Female 89.4
Sample C Male 142.0
Sample D Male 131.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.2
Samples: 4

Max nTPM: 76.0
Min nTPM: 63.9
Sample A Male 76.0
Sample B Male 63.9
Sample C Female 66.6
Sample D Female 70.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68269062 Antisense, RP_041208_01_H01, Mouse strain C57BL/6J (56 days, male) 0.9

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