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H3-3A
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  • SUMMARY

  • TISSUE

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  • H3-3A
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

H3-3A
Synonyms H3.3A, H3F3, H3F3A
Gene descriptioni

Full gene name according to HGNC.

H3.3 histone A
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q42.12
Chromosome location (bp) 226061851 - 226072019
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000163041 (version 109)
Entrez gene 3020
HGNC HGNC:4764
UniProt P84243 (UniProt - Evidence at protein level)
neXtProt NX_P84243
GeneCards H3-3A
Antibodypedia H3-3A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene contains introns and its mRNA is polyadenylated, unlike most histone genes. The protein encoded is a replication-independent member of the histone H3 family. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
H3-3A-201
ENSP00000355778
ENST00000366813
P84243
[Direct mapping] Histone H3.3
Show all
B2R4P9
[Target identity:100%; Query identity:100%] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000979 [RNA polymerase II core promoter sequence-specific DNA binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006334 [nucleosome assembly]
GO:0030307 [positive regulation of cell growth]
GO:0030527 [structural constituent of chromatin]
GO:0031492 [nucleosomal DNA binding]
GO:0032200 [telomere organization]
GO:0032991 [protein-containing complex]
GO:0046982 [protein heterodimerization activity]
GO:0070062 [extracellular exosome]
Show all
136 aa
15.3 kDa
No 0
H3-3A-202
ENSP00000355779
ENST00000366814
B4DEB1
[Direct mapping] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Show all
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0030527 [structural constituent of chromatin]
GO:0046982 [protein heterodimerization activity]
Show all
123 aa
14.1 kDa
No 0
H3-3A-203
ENSP00000355780
ENST00000366815
P84243
[Direct mapping] Histone H3.3
Show all
B2R4P9
[Target identity:100%; Query identity:100%] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000979 [RNA polymerase II core promoter sequence-specific DNA binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006334 [nucleosome assembly]
GO:0030307 [positive regulation of cell growth]
GO:0030527 [structural constituent of chromatin]
GO:0031492 [nucleosomal DNA binding]
GO:0032200 [telomere organization]
GO:0032991 [protein-containing complex]
GO:0046982 [protein heterodimerization activity]
GO:0070062 [extracellular exosome]
Show all
136 aa
15.3 kDa
No 0
H3-3A-204
ENSP00000355781
ENST00000366816
P84243
[Direct mapping] Histone H3.3
Show all
B2R4P9
[Target identity:100%; Query identity:100%] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000979 [RNA polymerase II core promoter sequence-specific DNA binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006334 [nucleosome assembly]
GO:0030307 [positive regulation of cell growth]
GO:0030527 [structural constituent of chromatin]
GO:0031492 [nucleosomal DNA binding]
GO:0032200 [telomere organization]
GO:0032991 [protein-containing complex]
GO:0046982 [protein heterodimerization activity]
GO:0070062 [extracellular exosome]
Show all
136 aa
15.3 kDa
No 0
H3-3A-206
ENSP00000499800
ENST00000655399
P84243
[Direct mapping] Histone H3.3
Show all
B2R4P9
[Target identity:100%; Query identity:100%] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000979 [RNA polymerase II core promoter sequence-specific DNA binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006334 [nucleosome assembly]
GO:0030307 [positive regulation of cell growth]
GO:0030527 [structural constituent of chromatin]
GO:0031492 [nucleosomal DNA binding]
GO:0032200 [telomere organization]
GO:0032991 [protein-containing complex]
GO:0046982 [protein heterodimerization activity]
GO:0070062 [extracellular exosome]
Show all
136 aa
15.3 kDa
No 0
H3-3A-208
ENSP00000499385
ENST00000661429
P84243
[Direct mapping] Histone H3.3
Show all
B2R4P9
[Target identity:100%; Query identity:100%] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000979 [RNA polymerase II core promoter sequence-specific DNA binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006334 [nucleosome assembly]
GO:0030307 [positive regulation of cell growth]
GO:0030527 [structural constituent of chromatin]
GO:0031492 [nucleosomal DNA binding]
GO:0032200 [telomere organization]
GO:0032991 [protein-containing complex]
GO:0046982 [protein heterodimerization activity]
GO:0070062 [extracellular exosome]
Show all
136 aa
15.3 kDa
No 0
H3-3A-209
ENSP00000499275
ENST00000666609
P84243
[Direct mapping] Histone H3.3
Show all
B2R4P9
[Target identity:100%; Query identity:100%] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000781 [chromosome, telomeric region]
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000979 [RNA polymerase II core promoter sequence-specific DNA binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0006334 [nucleosome assembly]
GO:0030307 [positive regulation of cell growth]
GO:0030527 [structural constituent of chromatin]
GO:0031492 [nucleosomal DNA binding]
GO:0032200 [telomere organization]
GO:0032991 [protein-containing complex]
GO:0046982 [protein heterodimerization activity]
GO:0070062 [extracellular exosome]
Show all
136 aa
15.3 kDa
No 0
H3-3A-210
ENSP00000499446
ENST00000667897
A0A590UJJ6
[Direct mapping] Histone H3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Missense Mutations
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
   Musculoskeletal diseases
   Skeletal diseases
Show all
GO:0000785 [chromatin]
GO:0000786 [nucleosome]
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0030527 [structural constituent of chromatin]
GO:0046982 [protein heterodimerization activity]
Show all
120 aa
13.7 kDa
No 0

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