MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:39.4 nTPM
GTEx:8.2 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:5.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
2019 Male, age 18, unknown 40.5
1870 Female, age 42, unknown 38.8
1830 Male, age 51, unknown 37.8
1833 Male, age 53, unknown 34.7
2666 Male, age 74, left hemisphere 33.8
2828 Female, age 72, unknown 32.4
1827 Male, age 72, unknown 31.3
2411 Female, age 72, unknown 30.5
2219 Male, age 76, both hemispheres 27.7
2586 Male, age 75, left hemisphere 24.3
Dorsal raphe nucleus
nTPM: 32.3
2016 Female, age 72, unknown 38.6
1828 Male, age 53, unknown 32.7
2047 Male, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 29.3
2298 Female, age 72, unknown 29.2
Inferior colliculus
nTPM: 35.7
1890 Male, age 53, unknown 36.6
2097 Female, age 72, unknown 35.9
2849 Male, age 72, unknown 35.7
1848 Female, age 42, unknown 34.7
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 38.9
1947 Male, age 18, unknown 44.9
2502 Female, age 75, unknown 38.9
1795 Male, age 51, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 38.7
2850 Male, age 76, both hemispheres 46.9
1840 Male, age 53, unknown 39.2
1831 Male, age 72, unknown 36.8
2464 Female, age 72, unknown 31.8
Periaquaductal grey, lateral
nTPM: 39.4
2272 Male, age 74, both hemispheres 45.5
2140 Male, age 76, both hemispheres 38.1
2053 Male, age 18, unknown 34.5
Pretectal area
nTPM: 36.0
2273 Male, age 74, both hemispheres 48.8
2224 Female, age 72, unknown 40.9
2667 Female, age 75, unknown 39.3
1815 Male, age 53, unknown 35.6
1816 Male, age 51, unknown 35.1
1817 Female, age 42, unknown 34.5
2825 Male, age 18, unknown 34.3
1944 Female, age 72, unknown 33.5
2007 Male, age 72, unknown 31.9
2316 Male, age 76, right hemisphere 31.7
2407 Male, age 75, both hemispheres 30.3
Red nucleus
nTPM: 36.0
2823 Male, age 76, right hemisphere 40.7
1904 Male, age 53, unknown 39.9
2503 Female, age 72, unknown 38.3
1954 Female, age 42, unknown 37.4
1865 Male, age 51, unknown 36.8
2725 Female, age 75, unknown 35.9
2769 Male, age 72, unknown 35.2
2584 Male, age 75, left hemisphere 34.2
2588 Male, age 74, left hemisphere 34.2
1821 Female, age 72, unknown 33.5
2785 Male, age 18, unknown 33.3
2227 Male, age 72, unknown 32.9
Substantia nigra
nTPM: 36.2
2409 Female, age 72, unknown 63.2
2241 Male, age 72, unknown 46.2
2665 Male, age 74, both hemispheres 36.2
1851 Male, age 51, unknown 33.1
1889 Female, age 72, unknown 32.2
1941 Male, age 53, unknown 31.9
2583 Male, age 75, right hemisphere 31.7
2699 Male, age 18, unknown 31.6
1916 Female, age 42, unknown 28.7
2590 Female, age 75, unknown 27.3
Superior colliculus
nTPM: 33.9
1913 Female, age 42, unknown 42.5
2587 Male, age 74, left hemisphere 38.8
2668 Female, age 75, unknown 38.8
1839 Male, age 51, unknown 35.9
1995 Male, age 72, unknown 35.3
2261 Male, age 18, unknown 32.9
1895 Male, age 76, right hemisphere 32.8
2087 Female, age 72, unknown 30.4
1796 Male, age 53, unknown 27.8
2664 Male, age 75, both hemispheres 23.3
Ventral tegmental area
nTPM: 34.2
2218 Male, age 76, both hemispheres 36.3
2021 Male, age 53, unknown 35.8
2223 Female, age 72, unknown 35.2
1942 Male, age 51, unknown 34.1
2410 Female, age 72, unknown 32.7
1915 Female, age 42, unknown 31.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 12.5
Min nTPM: 3.3
Std nTPM: 1.7
Median nTPM: 8.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 12.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 11.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 11.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 11.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 11.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 11.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 10.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.7
Sample A Female 10.0
Sample B Female 7.7
Sample C Male 9.8
Sample D Male 7.7
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 10.3
Min nTPM: 6.8
Sample A Female 7.7
Sample B Female 10.3
Sample C Male 6.8
Sample D Male 8.4
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.9
Min nTPM: 7.8
Sample B Female 9.9
Sample C Male 8.1
Sample D Male 7.8
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.1
Sample A Female 7.0
Sample B Female 6.1
Sample C Male 8.4
Sample D Male 6.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.6
Sample A Male 4.6
Sample B Male 5.2
Sample C Female 5.3
Sample D Female 5.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
583847 Antisense, RP_040831_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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