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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
190.1
nTPM
Monaco:
47.5
nTPM
Schmiedel:
22.1
TPM
T-CELLS - Annotated protein expression
Pending normal tissue analysis
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
190.1
HPA sample
nTPM
gdT-cell nTPM: 103.5
Samples: 6
Max nTPM: 127.8
Min nTPM: 80.8
P10809_1007
80.8
P10809_1022
127.8
P10809_1041
125.3
P10809_1060
89.3
P10809_1077
82.4
P10809_1098
115.2
MAIT T-cell nTPM: 102.1
Samples: 6
Max nTPM: 136.2
Min nTPM: 68.8
P10809_1006
74.8
P10809_1024
122.1
P10809_1043
136.2
P10809_1062
107.6
P10809_1083
68.8
P10809_1097
103.2
Memory CD4 T-cell nTPM: 126.1
Samples: 6
Max nTPM: 145.9
Min nTPM: 97.4
P10809_1014
97.4
P10809_1026
137.7
P10809_1045
145.9
P10809_1064
131.7
P10809_1086
114.6
P10809_1113
129.1
Memory CD8 T-cell nTPM: 105.1
Samples: 5
Max nTPM: 132.0
Min nTPM: 67.2
P10809_1012
67.2
P10809_1027
98.8
P10809_1046
123.5
P10809_1065
132.0
P10809_1111
104.2
Naive CD4 T-cell nTPM: 190.1
Samples: 6
Max nTPM: 262.8
Min nTPM: 119.8
P10809_1015
119.8
P10809_1030
215.0
P10809_1049
262.8
P10809_1068
182.9
P10809_1085
177.6
P10809_1112
182.5
Naive CD8 T-cell nTPM: 137.7
Samples: 6
Max nTPM: 165.3
Min nTPM: 105.7
P10809_1016
113.9
P10809_1031
150.5
P10809_1050
165.3
P10809_1069
154.2
P10809_1087
105.7
P10809_1110
136.6
T-reg nTPM: 156.1
Samples: 6
Max nTPM: 217.4
Min nTPM: 103.9
P10809_1018
103.9
P10809_1037
165.7
P10809_1056
217.4
P10809_1075
165.6
P10809_1094
120.8
P10809_1106
163.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
47.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 21.0
Samples: 4
Max nTPM: 24.7
Min nTPM: 15.5
RHH5202_R3573
21.5
RHH5230_R3602
15.5
RHH5259_R3631
22.3
RHH5288_R3660
24.7
Effector memory CD8 T-cell nTPM: 20.9
Samples: 4
Max nTPM: 26.5
Min nTPM: 15.1
RHH5203_R3574
26.5
RHH5231_R3603
21.7
RHH5260_R3632
15.1
RHH5289_R3661
20.2
MAIT T-cell nTPM: 21.7
Samples: 4
Max nTPM: 32.0
Min nTPM: 11.2
RHH5233_R3605
17.6
RHH5205_R3576
11.2
RHH5262_R3634
25.9
RHH5297_R3663
32.0
Memory CD4 T-cell TFH nTPM: 38.2
Samples: 4
Max nTPM: 57.1
Min nTPM: 15.6
RHH5300_R3666
57.1
RHH5236_R3608
24.1
RHH5265_R3637
56.1
RHH5208_R3579
15.6
Memory CD4 T-cell Th1 nTPM: 35.6
Samples: 4
Max nTPM: 54.8
Min nTPM: 19.9
RHH5210_R3581
31.0
RHH5302_R3668
54.8
RHH5238_R3610
19.9
RHH5267_R3639
36.8
Memory CD4 T-cell Th1/Th17 nTPM: 31.0
Samples: 4
Max nTPM: 46.3
Min nTPM: 13.4
RHH5303_R3669
46.3
RHH5211_R3582
35.7
RHH5239_R3611
13.4
RHH5268_R3640
28.4
Memory CD4 T-cell Th17 nTPM: 25.8
Samples: 4
Max nTPM: 31.4
Min nTPM: 16.2
RHH5304_R3670
28.3
RHH5212_R3583
27.4
RHH5240_R3612
16.2
RHH5269_R3641
31.4
Memory CD4 T-cell Th2 nTPM: 34.1
Samples: 4
Max nTPM: 40.8
Min nTPM: 23.6
RHH5305_R3671
40.8
RHH5213_R3584
23.6
RHH5241_R3613
33.6
RHH5270_R3642
38.4
Naive CD4 T-cell nTPM: 47.6
Samples: 4
Max nTPM: 63.5
Min nTPM: 34.1
RHH5306_R3672
63.5
RHH5214_R3585
47.0
RHH5242_R3614
34.1
RHH5271_R3643
45.6
Naive CD8 T-cell nTPM: 21.8
Samples: 4
Max nTPM: 28.7
Min nTPM: 7.8
RHH5201_R3572
22.3
RHH5229_R3601
7.8
RHH5258_R3630
28.7
RHH5287_R3659
28.4
Non-Vd2 gdTCR nTPM: 15.7
Samples: 4
Max nTPM: 22.1
Min nTPM: 9.2
RHH5235_R3607
9.2
RHH5264_R3636
21.5
RHH5207_R3578
9.8
RHH5299_R3665
22.1
T-reg nTPM: 42.2
Samples: 4
Max nTPM: 70.0
Min nTPM: 28.3
RHH5301_R3667
70.0
RHH5237_R3609
39.6
RHH5266_R3638
28.3
RHH5209_R3580
30.7
Terminal effector memory CD4 T-cell nTPM: 29.7
Samples: 2
Max nTPM: 48.3
Min nTPM: 11.0
RHH5243_R3615
11.0
RHH5272_R3644
48.3
Terminal effector memory CD8 T-cell nTPM: 21.3
Samples: 4
Max nTPM: 25.7
Min nTPM: 13.2
RHH5232_R3604
22.7
RHH5204_R3575
23.7
RHH5261_R3633
13.2
RHH5296_R3662
25.7
Vd2 gdTCR nTPM: 23.4
Samples: 4
Max nTPM: 34.3
Min nTPM: 10.9
RHH5234_R3606
10.9
RHH5206_R3577
33.4
RHH5263_R3635
14.9
RHH5298_R3664
34.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
