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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.1
nTPM
Monaco:
201.1
nTPM
Schmiedel:
212.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
54.1
HPA sample
nTPM
gdT-cell nTPM: 44.0
Samples: 6
Max nTPM: 53.3
Min nTPM: 15.6
P10809_1007
53.3
P10809_1022
52.9
P10809_1041
47.6
P10809_1060
15.6
P10809_1077
46.0
P10809_1098
48.6
MAIT T-cell nTPM: 42.0
Samples: 6
Max nTPM: 60.0
Min nTPM: 24.8
P10809_1006
56.6
P10809_1024
26.3
P10809_1043
30.5
P10809_1062
24.8
P10809_1083
60.0
P10809_1097
53.9
Memory CD4 T-cell nTPM: 40.2
Samples: 6
Max nTPM: 51.9
Min nTPM: 19.9
P10809_1014
49.5
P10809_1026
33.7
P10809_1045
36.1
P10809_1064
51.9
P10809_1086
50.1
P10809_1113
19.9
Memory CD8 T-cell nTPM: 45.4
Samples: 5
Max nTPM: 59.1
Min nTPM: 37.7
P10809_1012
47.1
P10809_1027
37.7
P10809_1046
38.2
P10809_1065
59.1
P10809_1111
44.9
Naive CD4 T-cell nTPM: 28.4
Samples: 6
Max nTPM: 42.3
Min nTPM: 19.6
P10809_1015
42.3
P10809_1030
23.1
P10809_1049
19.6
P10809_1068
28.2
P10809_1085
37.6
P10809_1112
19.6
Naive CD8 T-cell nTPM: 30.4
Samples: 6
Max nTPM: 43.3
Min nTPM: 19.0
P10809_1016
28.6
P10809_1031
27.1
P10809_1050
29.9
P10809_1069
43.3
P10809_1087
34.7
P10809_1110
19.0
T-reg nTPM: 54.1
Samples: 6
Max nTPM: 68.3
Min nTPM: 23.7
P10809_1018
64.1
P10809_1037
68.3
P10809_1056
49.8
P10809_1075
60.0
P10809_1094
23.7
P10809_1106
58.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
201.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 109.7
Samples: 4
Max nTPM: 137.3
Min nTPM: 63.1
RHH5202_R3573
63.1
RHH5230_R3602
137.3
RHH5259_R3631
132.4
RHH5288_R3660
106.0
Effector memory CD8 T-cell nTPM: 153.4
Samples: 4
Max nTPM: 202.6
Min nTPM: 85.7
RHH5203_R3574
143.5
RHH5231_R3603
181.6
RHH5260_R3632
202.6
RHH5289_R3661
85.7
MAIT T-cell nTPM: 152.5
Samples: 4
Max nTPM: 183.0
Min nTPM: 114.5
RHH5233_R3605
137.5
RHH5205_R3576
183.0
RHH5262_R3634
174.9
RHH5297_R3663
114.5
Memory CD4 T-cell TFH nTPM: 104.7
Samples: 4
Max nTPM: 132.0
Min nTPM: 29.0
RHH5300_R3666
127.9
RHH5236_R3608
132.0
RHH5265_R3637
129.9
RHH5208_R3579
29.0
Memory CD4 T-cell Th1 nTPM: 110.4
Samples: 4
Max nTPM: 141.1
Min nTPM: 84.5
RHH5210_R3581
84.5
RHH5302_R3668
100.0
RHH5238_R3610
116.1
RHH5267_R3639
141.1
Memory CD4 T-cell Th1/Th17 nTPM: 129.6
Samples: 4
Max nTPM: 167.2
Min nTPM: 58.2
RHH5303_R3669
58.2
RHH5211_R3582
145.9
RHH5239_R3611
167.2
RHH5268_R3640
147.1
Memory CD4 T-cell Th17 nTPM: 143.2
Samples: 4
Max nTPM: 164.6
Min nTPM: 116.9
RHH5304_R3670
116.9
RHH5212_R3583
142.7
RHH5240_R3612
148.7
RHH5269_R3641
164.6
Memory CD4 T-cell Th2 nTPM: 124.4
Samples: 4
Max nTPM: 158.1
Min nTPM: 67.7
RHH5305_R3671
143.5
RHH5213_R3584
128.3
RHH5241_R3613
67.7
RHH5270_R3642
158.1
Naive CD4 T-cell nTPM: 100.2
Samples: 4
Max nTPM: 117.3
Min nTPM: 82.1
RHH5306_R3672
110.1
RHH5214_R3585
82.1
RHH5242_R3614
91.4
RHH5271_R3643
117.3
Naive CD8 T-cell nTPM: 51.5
Samples: 4
Max nTPM: 66.6
Min nTPM: 16.4
RHH5201_R3572
16.4
RHH5229_R3601
65.6
RHH5258_R3630
66.6
RHH5287_R3659
57.2
Non-Vd2 gdTCR nTPM: 116.7
Samples: 4
Max nTPM: 126.4
Min nTPM: 92.8
RHH5235_R3607
124.0
RHH5264_R3636
126.4
RHH5207_R3578
92.8
RHH5299_R3665
123.5
T-reg nTPM: 133.6
Samples: 4
Max nTPM: 148.0
Min nTPM: 114.0
RHH5301_R3667
125.6
RHH5237_R3609
146.7
RHH5266_R3638
148.0
RHH5209_R3580
114.0
Terminal effector memory CD4 T-cell nTPM: 201.1
Samples: 2
Max nTPM: 222.6
Min nTPM: 179.5
RHH5243_R3615
222.6
RHH5272_R3644
179.5
Terminal effector memory CD8 T-cell nTPM: 129.4
Samples: 4
Max nTPM: 174.5
Min nTPM: 82.2
RHH5232_R3604
133.3
RHH5204_R3575
127.7
RHH5261_R3633
174.5
RHH5296_R3662
82.2
Vd2 gdTCR nTPM: 169.7
Samples: 4
Max nTPM: 193.9
Min nTPM: 135.5
RHH5234_R3606
181.6
RHH5206_R3577
167.8
RHH5263_R3635
193.9
RHH5298_R3664
135.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
