MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA Brain:36.0 nTPM
GTEx:33.2 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:10.3 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
1833 Male, age 53, unknown 34.2
1870 Female, age 42, unknown 33.5
1830 Male, age 51, unknown 32.8
2666 Male, age 74, left hemisphere 32.0
2019 Male, age 18, unknown 31.3
2411 Female, age 72, unknown 30.0
1827 Male, age 72, unknown 28.5
2828 Female, age 72, unknown 28.2
2586 Male, age 75, left hemisphere 27.7
2219 Male, age 76, both hemispheres 26.0
Dorsal raphe nucleus
nTPM: 27.3
2750 Male, age 76, both hemispheres 32.1
2016 Female, age 72, unknown 28.9
1828 Male, age 53, unknown 27.7
2047 Male, age 72, unknown 24.4
2298 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 27.9
2849 Male, age 72, unknown 31.4
1848 Female, age 42, unknown 28.5
1890 Male, age 53, unknown 27.7
2097 Female, age 72, unknown 24.1
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 25.3
1947 Male, age 18, unknown 27.6
1795 Male, age 51, unknown 24.3
2502 Female, age 75, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 28.8
2850 Male, age 76, both hemispheres 36.7
1831 Male, age 72, unknown 28.1
2464 Female, age 72, unknown 26.5
1840 Male, age 53, unknown 24.0
Periaquaductal grey, lateral
nTPM: 30.6
2140 Male, age 76, both hemispheres 35.0
2272 Male, age 74, both hemispheres 28.5
2053 Male, age 18, unknown 28.2
Pretectal area
nTPM: 27.4
1815 Male, age 53, unknown 30.8
1817 Female, age 42, unknown 28.5
2316 Male, age 76, right hemisphere 28.3
2825 Male, age 18, unknown 28.3
2007 Male, age 72, unknown 28.2
2407 Male, age 75, both hemispheres 27.7
2273 Male, age 74, both hemispheres 27.5
2224 Female, age 72, unknown 26.3
2667 Female, age 75, unknown 25.6
1944 Female, age 72, unknown 25.4
1816 Male, age 51, unknown 25.1
Red nucleus
nTPM: 36.0
2503 Female, age 72, unknown 41.5
2823 Male, age 76, right hemisphere 39.8
2725 Female, age 75, unknown 38.9
1904 Male, age 53, unknown 38.5
1865 Male, age 51, unknown 38.3
2588 Male, age 74, left hemisphere 36.5
2227 Male, age 72, unknown 36.3
1954 Female, age 42, unknown 34.9
1821 Female, age 72, unknown 33.9
2769 Male, age 72, unknown 33.1
2785 Male, age 18, unknown 31.7
2584 Male, age 75, left hemisphere 28.1
Substantia nigra
nTPM: 28.5
2409 Female, age 72, unknown 32.6
2699 Male, age 18, unknown 32.6
2590 Female, age 75, unknown 30.3
2583 Male, age 75, right hemisphere 28.3
1889 Female, age 72, unknown 28.0
1851 Male, age 51, unknown 27.8
2241 Male, age 72, unknown 27.2
1941 Male, age 53, unknown 27.0
1916 Female, age 42, unknown 26.4
2665 Male, age 74, both hemispheres 24.6
Superior colliculus
nTPM: 28.6
1913 Female, age 42, unknown 34.4
1995 Male, age 72, unknown 32.6
2587 Male, age 74, left hemisphere 30.8
1895 Male, age 76, right hemisphere 29.8
1839 Male, age 51, unknown 29.5
2668 Female, age 75, unknown 27.5
1796 Male, age 53, unknown 26.4
2087 Female, age 72, unknown 26.1
2261 Male, age 18, unknown 25.9
2664 Male, age 75, both hemispheres 23.3
Ventral tegmental area
nTPM: 27.7
2223 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 28.3
1915 Female, age 42, unknown 27.6
2410 Female, age 72, unknown 27.5
2021 Male, age 53, unknown 26.7
1942 Male, age 51, unknown 26.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.2
Samples: 139

Max nTPM: 82.8
Min nTPM: 16.7
Std nTPM: 11.2
Median nTPM: 31.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 82.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 72.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 69.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 60.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 59.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 57.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 56.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 51.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 50.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.5
Samples: 4

Max nTPM: 22.4
Min nTPM: 18.8
Sample A Female 19.6
Sample B Female 18.8
Sample C Male 21.2
Sample D Male 22.4
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.6
Sample A Female 24.6
Sample B Female 20.6
Sample C Male 21.2
Sample D Male 23.3
Periaqueductal gray
nTPM: 21.7
Samples: 3

Max nTPM: 23.0
Min nTPM: 21.0
Sample B Female 21.2
Sample C Male 23.0
Sample D Male 21.0
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 21.3
Sample A Female 23.9
Sample B Female 22.2
Sample C Male 21.3
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 10.7
Sample C Female 10.6
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69353774 Antisense, RP_050412_02_F11, Mouse strain C57BL/6J (56 days, male) 3.6

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