MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:51.7 nTPM
GTEx:19.2 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:39.5 nTPM
Mouse:35.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.0
1870 Female, age 42, unknown 53.9
1827 Male, age 72, unknown 51.5
2411 Female, age 72, unknown 50.5
2666 Male, age 74, left hemisphere 50.3
1833 Male, age 53, unknown 49.8
1830 Male, age 51, unknown 48.6
2828 Female, age 72, unknown 47.8
2586 Male, age 75, left hemisphere 47.6
2019 Male, age 18, unknown 47.0
2219 Male, age 76, both hemispheres 42.9
Dorsal raphe nucleus
nTPM: 46.7
2750 Male, age 76, both hemispheres 48.6
2016 Female, age 72, unknown 47.0
2298 Female, age 72, unknown 46.4
2047 Male, age 72, unknown 46.2
1828 Male, age 53, unknown 45.2
Inferior colliculus
nTPM: 48.3
1890 Male, age 53, unknown 50.0
1848 Female, age 42, unknown 48.7
2849 Male, age 72, unknown 47.4
2097 Female, age 72, unknown 47.2
Median raphe nucleus
nTPM: 51.7
2220 Male, age 76, midline 51.7
Periaquaductal grey, anterior
nTPM: 45.7
1947 Male, age 18, unknown 48.9
2502 Female, age 75, unknown 44.3
1795 Male, age 51, unknown 43.9
Periaquaductal grey, dorsal
nTPM: 49.5
1840 Male, age 53, unknown 52.8
1831 Male, age 72, unknown 52.6
2850 Male, age 76, both hemispheres 50.4
2464 Female, age 72, unknown 42.0
Periaquaductal grey, lateral
nTPM: 48.0
2053 Male, age 18, unknown 51.1
2140 Male, age 76, both hemispheres 48.2
2272 Male, age 74, both hemispheres 44.7
Pretectal area
nTPM: 49.5
1815 Male, age 53, unknown 52.6
1817 Female, age 42, unknown 52.5
1816 Male, age 51, unknown 52.3
1944 Female, age 72, unknown 51.4
2667 Female, age 75, unknown 49.7
2407 Male, age 75, both hemispheres 49.5
2007 Male, age 72, unknown 48.2
2316 Male, age 76, right hemisphere 47.8
2224 Female, age 72, unknown 47.6
2273 Male, age 74, both hemispheres 47.2
2825 Male, age 18, unknown 45.7
Red nucleus
nTPM: 49.7
1821 Female, age 72, unknown 56.9
1904 Male, age 53, unknown 53.6
2503 Female, age 72, unknown 53.3
2725 Female, age 75, unknown 53.0
1954 Female, age 42, unknown 51.4
1865 Male, age 51, unknown 49.4
2785 Male, age 18, unknown 47.9
2823 Male, age 76, right hemisphere 47.7
2588 Male, age 74, left hemisphere 47.4
2584 Male, age 75, left hemisphere 45.7
2769 Male, age 72, unknown 45.5
2227 Male, age 72, unknown 44.3
Substantia nigra
nTPM: 49.9
2409 Female, age 72, unknown 55.0
2241 Male, age 72, unknown 54.0
2699 Male, age 18, unknown 52.9
1889 Female, age 72, unknown 51.8
2583 Male, age 75, right hemisphere 51.4
1851 Male, age 51, unknown 50.9
1916 Female, age 42, unknown 50.6
2590 Female, age 75, unknown 45.8
2665 Male, age 74, both hemispheres 43.7
1941 Male, age 53, unknown 42.6
Superior colliculus
nTPM: 48.1
1895 Male, age 76, right hemisphere 51.7
1913 Female, age 42, unknown 51.6
1995 Male, age 72, unknown 50.5
2668 Female, age 75, unknown 49.9
1796 Male, age 53, unknown 48.6
2587 Male, age 74, left hemisphere 48.1
2261 Male, age 18, unknown 46.1
1839 Male, age 51, unknown 45.6
2087 Female, age 72, unknown 44.4
2664 Male, age 75, both hemispheres 44.3
Ventral tegmental area
nTPM: 48.3
2410 Female, age 72, unknown 49.6
2223 Female, age 72, unknown 49.3
1942 Male, age 51, unknown 49.2
2218 Male, age 76, both hemispheres 48.9
1915 Female, age 42, unknown 48.3
2021 Male, age 53, unknown 44.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 32.7
Min nTPM: 13.5
Std nTPM: 3.3
Median nTPM: 18.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 32.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 31.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 28.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 25.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 24.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 24.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 24.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 24.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 41.6
Min nTPM: 32.0
Sample A Female 41.6
Sample B Female 34.9
Sample C Male 33.0
Sample D Male 32.0
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 42.1
Min nTPM: 37.1
Sample A Female 42.1
Sample B Female 38.5
Sample C Male 40.4
Sample D Male 37.1
Periaqueductal gray
nTPM: 32.3
Samples: 3

Max nTPM: 32.5
Min nTPM: 31.9
Sample B Female 31.9
Sample C Male 32.5
Sample D Male 32.4
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 40.9
Min nTPM: 35.2
Sample A Female 40.9
Sample B Female 36.1
Sample C Male 36.8
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 37.1
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 37.1
Sample C Female 34.6
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68919958 Antisense, RP_050301_02_H03, Mouse strain C57BL/6J (56 days, male) 0.6

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