MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:134.9 nTPM
HPA Brain:206.3 nTPM
GTEx:134.9 nTPM
FANTOM5:89.8 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:29.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 206.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 151.7
2828 Female, age 72, unknown 236.0
2586 Male, age 75, left hemisphere 205.5
1827 Male, age 72, unknown 178.2
2666 Male, age 74, left hemisphere 148.6
1833 Male, age 53, unknown 146.0
1870 Female, age 42, unknown 142.5
2411 Female, age 72, unknown 135.5
1830 Male, age 51, unknown 122.6
2019 Male, age 18, unknown 105.7
2219 Male, age 76, both hemispheres 96.1
Dorsal raphe nucleus
nTPM: 179.0
2016 Female, age 72, unknown 207.9
2298 Female, age 72, unknown 192.0
1828 Male, age 53, unknown 191.0
2047 Male, age 72, unknown 179.8
2750 Male, age 76, both hemispheres 124.3
Inferior colliculus
nTPM: 206.3
2849 Male, age 72, unknown 232.0
1848 Female, age 42, unknown 212.5
1890 Male, age 53, unknown 192.5
2097 Female, age 72, unknown 188.4
Median raphe nucleus
nTPM: 123.9
2220 Male, age 76, midline 123.9
Periaquaductal grey, anterior
nTPM: 176.1
1795 Male, age 51, unknown 195.5
2502 Female, age 75, unknown 187.0
1947 Male, age 18, unknown 145.7
Periaquaductal grey, dorsal
nTPM: 200.0
1840 Male, age 53, unknown 239.4
2464 Female, age 72, unknown 199.5
2850 Male, age 76, both hemispheres 198.7
1831 Male, age 72, unknown 162.6
Periaquaductal grey, lateral
nTPM: 203.1
2140 Male, age 76, both hemispheres 225.2
2053 Male, age 18, unknown 224.6
2272 Male, age 74, both hemispheres 159.4
Pretectal area
nTPM: 159.0
2667 Female, age 75, unknown 203.9
2825 Male, age 18, unknown 201.3
2273 Male, age 74, both hemispheres 170.1
1944 Female, age 72, unknown 166.0
1816 Male, age 51, unknown 164.9
2316 Male, age 76, right hemisphere 160.2
1817 Female, age 42, unknown 152.8
2224 Female, age 72, unknown 149.7
1815 Male, age 53, unknown 137.3
2407 Male, age 75, both hemispheres 136.5
2007 Male, age 72, unknown 106.2
Red nucleus
nTPM: 154.0
2227 Male, age 72, unknown 180.4
2769 Male, age 72, unknown 178.9
2503 Female, age 72, unknown 177.0
1954 Female, age 42, unknown 173.3
2588 Male, age 74, left hemisphere 171.7
2823 Male, age 76, right hemisphere 156.4
2725 Female, age 75, unknown 153.1
1821 Female, age 72, unknown 150.0
1904 Male, age 53, unknown 145.8
1865 Male, age 51, unknown 135.1
2584 Male, age 75, left hemisphere 123.0
2785 Male, age 18, unknown 103.2
Substantia nigra
nTPM: 160.6
2699 Male, age 18, unknown 255.4
1916 Female, age 42, unknown 194.0
1851 Male, age 51, unknown 165.5
2665 Male, age 74, both hemispheres 163.0
2409 Female, age 72, unknown 153.9
1889 Female, age 72, unknown 147.2
2241 Male, age 72, unknown 142.7
2583 Male, age 75, right hemisphere 134.2
1941 Male, age 53, unknown 129.2
2590 Female, age 75, unknown 120.8
Superior colliculus
nTPM: 161.8
2664 Male, age 75, both hemispheres 203.7
1796 Male, age 53, unknown 178.8
2087 Female, age 72, unknown 172.4
2261 Male, age 18, unknown 167.4
1839 Male, age 51, unknown 163.5
1995 Male, age 72, unknown 162.4
2668 Female, age 75, unknown 148.7
2587 Male, age 74, left hemisphere 146.3
1895 Male, age 76, right hemisphere 141.7
1913 Female, age 42, unknown 132.8
Ventral tegmental area
nTPM: 144.7
1915 Female, age 42, unknown 169.6
2021 Male, age 53, unknown 152.6
1942 Male, age 51, unknown 152.4
2410 Female, age 72, unknown 147.0
2218 Male, age 76, both hemispheres 132.8
2223 Female, age 72, unknown 113.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.9
Samples: 139

Max nTPM: 662.8
Min nTPM: 15.6
Std nTPM: 93.2
Median nTPM: 107.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 662.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 575.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 438.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 368.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 350.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 344.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 307.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 301.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 273.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 262.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 235.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.8
FF:10158-103A5 76 years, female 89.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.8
Samples: 4

Max nTPM: 66.0
Min nTPM: 49.0
Sample A Female 54.0
Sample B Female 66.0
Sample C Male 49.0
Sample D Male 58.2
Midbrain
nTPM: 56.0
Samples: 4

Max nTPM: 78.7
Min nTPM: 43.4
Sample A Female 78.7
Sample B Female 52.7
Sample C Male 49.1
Sample D Male 43.4
Periaqueductal gray
nTPM: 53.9
Samples: 3

Max nTPM: 58.6
Min nTPM: 47.2
Sample B Female 58.6
Sample C Male 55.9
Sample D Male 47.2
Superior colliculi
nTPM: 68.6
Samples: 4

Max nTPM: 110.3
Min nTPM: 48.2
Sample A Female 65.3
Sample B Female 110.3
Sample C Male 48.2
Sample D Male 50.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 31.2
Min nTPM: 28.1
Sample A Male 31.2
Sample B Male 28.1
Sample C Female 28.9
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
532728 Antisense, RP_040825_01_H01, Mouse strain C57BL/6J (56 days, male) 0.3
70919633 Antisense, RP_050713_01_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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