MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.4 nTPM
HPA Brain:218.8 nTPM
GTEx:111.4 nTPM
FANTOM5:136.2 Scaled Tags Per Million
Pig:300.7 nTPM
Mouse:127.8 nTPM
Allen mouse:11.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 218.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.9
2019 Male, age 18, unknown 247.6
1827 Male, age 72, unknown 177.3
2219 Male, age 76, both hemispheres 175.7
2411 Female, age 72, unknown 171.4
2666 Male, age 74, left hemisphere 155.1
1870 Female, age 42, unknown 145.6
1833 Male, age 53, unknown 144.0
2586 Male, age 75, left hemisphere 143.4
1830 Male, age 51, unknown 141.3
2828 Female, age 72, unknown 137.6
Dorsal raphe nucleus
nTPM: 146.7
2298 Female, age 72, unknown 172.9
2750 Male, age 76, both hemispheres 152.8
2047 Male, age 72, unknown 148.9
1828 Male, age 53, unknown 143.6
2016 Female, age 72, unknown 115.2
Inferior colliculus
nTPM: 182.1
2097 Female, age 72, unknown 204.0
1890 Male, age 53, unknown 188.0
1848 Female, age 42, unknown 178.1
2849 Male, age 72, unknown 158.2
Median raphe nucleus
nTPM: 159.5
2220 Male, age 76, midline 159.5
Periaquaductal grey, anterior
nTPM: 167.3
2502 Female, age 75, unknown 203.7
1795 Male, age 51, unknown 155.2
1947 Male, age 18, unknown 143.1
Periaquaductal grey, dorsal
nTPM: 131.5
2850 Male, age 76, both hemispheres 147.5
1840 Male, age 53, unknown 128.8
2464 Female, age 72, unknown 125.5
1831 Male, age 72, unknown 124.3
Periaquaductal grey, lateral
nTPM: 151.9
2272 Male, age 74, both hemispheres 189.3
2140 Male, age 76, both hemispheres 136.4
2053 Male, age 18, unknown 130.1
Pretectal area
nTPM: 195.4
2007 Male, age 72, unknown 270.3
1816 Male, age 51, unknown 263.4
1817 Female, age 42, unknown 260.8
1944 Female, age 72, unknown 228.8
1815 Male, age 53, unknown 209.1
2273 Male, age 74, both hemispheres 186.1
2407 Male, age 75, both hemispheres 175.0
2667 Female, age 75, unknown 167.0
2825 Male, age 18, unknown 136.6
2224 Female, age 72, unknown 129.8
2316 Male, age 76, right hemisphere 122.7
Red nucleus
nTPM: 178.1
2785 Male, age 18, unknown 233.6
1821 Female, age 72, unknown 232.1
1865 Male, age 51, unknown 180.7
2588 Male, age 74, left hemisphere 179.2
1904 Male, age 53, unknown 176.4
1954 Female, age 42, unknown 175.7
2725 Female, age 75, unknown 174.9
2584 Male, age 75, left hemisphere 173.4
2769 Male, age 72, unknown 157.1
2227 Male, age 72, unknown 154.9
2503 Female, age 72, unknown 153.5
2823 Male, age 76, right hemisphere 145.7
Substantia nigra
nTPM: 218.8
1941 Male, age 53, unknown 290.2
1916 Female, age 42, unknown 288.9
1851 Male, age 51, unknown 236.4
2241 Male, age 72, unknown 232.2
1889 Female, age 72, unknown 224.7
2665 Male, age 74, both hemispheres 198.2
2409 Female, age 72, unknown 195.4
2583 Male, age 75, right hemisphere 181.0
2590 Female, age 75, unknown 179.4
2699 Male, age 18, unknown 161.6
Superior colliculus
nTPM: 168.7
2087 Female, age 72, unknown 202.7
2261 Male, age 18, unknown 200.1
2587 Male, age 74, left hemisphere 189.0
2668 Female, age 75, unknown 184.6
1796 Male, age 53, unknown 175.4
1895 Male, age 76, right hemisphere 160.5
1913 Female, age 42, unknown 150.7
1995 Male, age 72, unknown 147.8
1839 Male, age 51, unknown 144.5
2664 Male, age 75, both hemispheres 131.2
Ventral tegmental area
nTPM: 180.2
2410 Female, age 72, unknown 230.4
1915 Female, age 42, unknown 199.8
2218 Male, age 76, both hemispheres 184.9
2223 Female, age 72, unknown 183.1
1942 Male, age 51, unknown 157.7
2021 Male, age 53, unknown 125.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.4
Samples: 139

Max nTPM: 559.0
Min nTPM: 26.2
Std nTPM: 61.5
Median nTPM: 98.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 559.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 339.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 312.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 232.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 219.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 210.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 210.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 202.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 200.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 180.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 178.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.2
FF:10158-103A5 76 years, female 136.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 300.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 188.7
Samples: 4

Max nTPM: 250.1
Min nTPM: 131.3
Sample A Female 250.1
Sample B Female 131.3
Sample C Male 195.8
Sample D Male 177.5
Midbrain
nTPM: 300.8
Samples: 4

Max nTPM: 384.9
Min nTPM: 132.5
Sample A Female 372.2
Sample B Female 132.5
Sample C Male 384.9
Sample D Male 313.4
Periaqueductal gray
nTPM: 139.5
Samples: 3

Max nTPM: 173.1
Min nTPM: 121.4
Sample B Female 121.4
Sample C Male 173.1
Sample D Male 124.0
Superior colliculi
nTPM: 284.2
Samples: 4

Max nTPM: 358.0
Min nTPM: 194.2
Sample A Female 321.9
Sample B Female 194.2
Sample C Male 358.0
Sample D Male 262.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 127.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.8
Samples: 4

Max nTPM: 133.2
Min nTPM: 119.9
Sample A Male 119.9
Sample B Male 126.4
Sample C Female 133.2
Sample D Female 131.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
71836844 Antisense, RP_051017_02_C07, Mouse strain C57BL/6J (56 days, male) 14.7
100055054 Antisense, RP_080110_01_A05, Mouse strain C57BL/6J (56 days, male) 13.9
100055045 Antisense, RP_080110_01_A05, Mouse strain C57BL/6J (56 days, male) 13.2
100055069 Antisense, RP_080110_01_A05, Mouse strain C57BL/6J (56 days, male) 13.2
68157413 Antisense, RP_041116_02_F06, Mouse strain C57BL/6J (56 days, male) 5.2

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