MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.3 nTPM
HPA Brain:85.2 nTPM
GTEx:63.3 nTPM
FANTOM5:156.0 Scaled Tags Per Million
Pig:133.0 nTPM
Mouse:169.7 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.0
2411 Female, age 72, unknown 91.2
1870 Female, age 42, unknown 80.8
1827 Male, age 72, unknown 79.0
2019 Male, age 18, unknown 78.4
1833 Male, age 53, unknown 74.1
2828 Female, age 72, unknown 70.9
1830 Male, age 51, unknown 67.8
2219 Male, age 76, both hemispheres 66.4
2586 Male, age 75, left hemisphere 57.2
2666 Male, age 74, left hemisphere 53.7
Dorsal raphe nucleus
nTPM: 82.6
2298 Female, age 72, unknown 101.5
2750 Male, age 76, both hemispheres 84.0
2047 Male, age 72, unknown 79.5
1828 Male, age 53, unknown 75.0
2016 Female, age 72, unknown 73.2
Inferior colliculus
nTPM: 71.0
2097 Female, age 72, unknown 82.0
1890 Male, age 53, unknown 69.3
1848 Female, age 42, unknown 67.8
2849 Male, age 72, unknown 64.8
Median raphe nucleus
nTPM: 85.2
2220 Male, age 76, midline 85.2
Periaquaductal grey, anterior
nTPM: 76.3
1947 Male, age 18, unknown 79.6
2502 Female, age 75, unknown 77.9
1795 Male, age 51, unknown 71.5
Periaquaductal grey, dorsal
nTPM: 68.5
1840 Male, age 53, unknown 72.6
2850 Male, age 76, both hemispheres 72.4
2464 Female, age 72, unknown 65.2
1831 Male, age 72, unknown 63.9
Periaquaductal grey, lateral
nTPM: 76.0
2272 Male, age 74, both hemispheres 87.6
2053 Male, age 18, unknown 72.7
2140 Male, age 76, both hemispheres 67.7
Pretectal area
nTPM: 79.4
2273 Male, age 74, both hemispheres 95.7
2007 Male, age 72, unknown 86.5
2224 Female, age 72, unknown 86.0
1817 Female, age 42, unknown 84.9
1816 Male, age 51, unknown 82.0
1944 Female, age 72, unknown 81.6
1815 Male, age 53, unknown 79.9
2667 Female, age 75, unknown 79.4
2825 Male, age 18, unknown 69.5
2316 Male, age 76, right hemisphere 67.3
2407 Male, age 75, both hemispheres 60.9
Red nucleus
nTPM: 72.1
1821 Female, age 72, unknown 87.7
1865 Male, age 51, unknown 79.5
2503 Female, age 72, unknown 78.0
2785 Male, age 18, unknown 74.9
1904 Male, age 53, unknown 74.5
1954 Female, age 42, unknown 73.3
2725 Female, age 75, unknown 70.8
2769 Male, age 72, unknown 70.0
2227 Male, age 72, unknown 69.6
2823 Male, age 76, right hemisphere 68.0
2588 Male, age 74, left hemisphere 62.2
2584 Male, age 75, left hemisphere 56.3
Substantia nigra
nTPM: 80.7
1916 Female, age 42, unknown 101.6
1851 Male, age 51, unknown 90.3
2241 Male, age 72, unknown 89.1
1889 Female, age 72, unknown 84.0
1941 Male, age 53, unknown 81.6
2409 Female, age 72, unknown 77.6
2590 Female, age 75, unknown 76.9
2699 Male, age 18, unknown 74.0
2583 Male, age 75, right hemisphere 67.2
2665 Male, age 74, both hemispheres 64.7
Superior colliculus
nTPM: 71.1
2587 Male, age 74, left hemisphere 86.7
1796 Male, age 53, unknown 76.9
2261 Male, age 18, unknown 74.9
2668 Female, age 75, unknown 72.3
2087 Female, age 72, unknown 71.8
1913 Female, age 42, unknown 71.0
1895 Male, age 76, right hemisphere 70.7
1839 Male, age 51, unknown 68.1
1995 Male, age 72, unknown 66.1
2664 Male, age 75, both hemispheres 52.5
Ventral tegmental area
nTPM: 80.5
2410 Female, age 72, unknown 94.9
1915 Female, age 42, unknown 85.1
2218 Male, age 76, both hemispheres 82.8
2223 Female, age 72, unknown 79.7
1942 Male, age 51, unknown 71.2
2021 Male, age 53, unknown 69.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.3
Samples: 139

Max nTPM: 172.7
Min nTPM: 25.4
Std nTPM: 20.3
Median nTPM: 59.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 172.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 156.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 141.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 134.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 124.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 94.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 91.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 89.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 88.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 86.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.0
FF:10158-103A5 76 years, female 156.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 133.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 120.8
Samples: 4

Max nTPM: 157.8
Min nTPM: 99.1
Sample A Female 157.8
Sample B Female 99.1
Sample C Male 126.5
Sample D Male 99.9
Midbrain
nTPM: 129.7
Samples: 4

Max nTPM: 161.1
Min nTPM: 117.5
Sample A Female 161.1
Sample B Female 122.6
Sample C Male 117.7
Sample D Male 117.5
Periaqueductal gray
nTPM: 109.2
Samples: 3

Max nTPM: 119.1
Min nTPM: 97.6
Sample B Female 111.0
Sample C Male 119.1
Sample D Male 97.6
Superior colliculi
nTPM: 133.0
Samples: 4

Max nTPM: 156.9
Min nTPM: 111.5
Sample A Female 156.9
Sample B Female 111.5
Sample C Male 138.2
Sample D Male 125.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.8
Samples: 4

Max nTPM: 172.5
Min nTPM: 167.3
Sample A Male 167.3
Sample B Male 172.5
Sample C Female 167.9
Sample D Female 171.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
69540543 Antisense, RP_050426_01_H12, Mouse strain C57BL/6J (56 days, male) 4.8

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