MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.8 nTPM
HPA Brain:113.9 nTPM
GTEx:77.8 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:44.4 nTPM
Mouse:178.4 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.1
2586 Male, age 75, left hemisphere 121.1
2411 Female, age 72, unknown 115.3
1833 Male, age 53, unknown 106.3
1830 Male, age 51, unknown 104.2
1870 Female, age 42, unknown 100.0
2019 Male, age 18, unknown 92.9
2828 Female, age 72, unknown 90.2
2666 Male, age 74, left hemisphere 89.0
1827 Male, age 72, unknown 83.5
2219 Male, age 76, both hemispheres 78.6
Dorsal raphe nucleus
nTPM: 83.2
2750 Male, age 76, both hemispheres 102.1
1828 Male, age 53, unknown 87.6
2016 Female, age 72, unknown 82.3
2047 Male, age 72, unknown 78.9
2298 Female, age 72, unknown 65.1
Inferior colliculus
nTPM: 76.0
2849 Male, age 72, unknown 80.3
1890 Male, age 53, unknown 78.4
1848 Female, age 42, unknown 73.6
2097 Female, age 72, unknown 71.7
Median raphe nucleus
nTPM: 70.3
2220 Male, age 76, midline 70.3
Periaquaductal grey, anterior
nTPM: 76.9
2502 Female, age 75, unknown 87.3
1947 Male, age 18, unknown 78.2
1795 Male, age 51, unknown 65.2
Periaquaductal grey, dorsal
nTPM: 63.8
2464 Female, age 72, unknown 81.1
1831 Male, age 72, unknown 61.1
1840 Male, age 53, unknown 59.9
2850 Male, age 76, both hemispheres 53.1
Periaquaductal grey, lateral
nTPM: 60.4
2053 Male, age 18, unknown 65.3
2272 Male, age 74, both hemispheres 58.3
2140 Male, age 76, both hemispheres 57.7
Pretectal area
nTPM: 74.9
2407 Male, age 75, both hemispheres 94.9
2316 Male, age 76, right hemisphere 85.0
1815 Male, age 53, unknown 83.8
1817 Female, age 42, unknown 83.5
2825 Male, age 18, unknown 82.6
2007 Male, age 72, unknown 80.8
2667 Female, age 75, unknown 75.4
1816 Male, age 51, unknown 62.3
1944 Female, age 72, unknown 61.4
2224 Female, age 72, unknown 60.6
2273 Male, age 74, both hemispheres 53.2
Red nucleus
nTPM: 113.9
1904 Male, age 53, unknown 126.4
2588 Male, age 74, left hemisphere 123.6
2227 Male, age 72, unknown 122.6
1865 Male, age 51, unknown 122.1
2769 Male, age 72, unknown 121.3
2503 Female, age 72, unknown 118.3
2823 Male, age 76, right hemisphere 113.3
1821 Female, age 72, unknown 112.0
1954 Female, age 42, unknown 107.6
2584 Male, age 75, left hemisphere 103.3
2785 Male, age 18, unknown 102.7
2725 Female, age 75, unknown 93.9
Substantia nigra
nTPM: 86.2
1851 Male, age 51, unknown 102.6
2699 Male, age 18, unknown 102.2
2583 Male, age 75, right hemisphere 98.6
1916 Female, age 42, unknown 95.3
2409 Female, age 72, unknown 83.5
1889 Female, age 72, unknown 82.3
2665 Male, age 74, both hemispheres 79.6
2590 Female, age 75, unknown 78.3
1941 Male, age 53, unknown 73.1
2241 Male, age 72, unknown 66.4
Superior colliculus
nTPM: 88.1
1913 Female, age 42, unknown 105.4
1995 Male, age 72, unknown 105.1
2668 Female, age 75, unknown 98.3
1895 Male, age 76, right hemisphere 94.8
2664 Male, age 75, both hemispheres 90.1
1839 Male, age 51, unknown 88.9
2587 Male, age 74, left hemisphere 83.4
1796 Male, age 53, unknown 78.1
2087 Female, age 72, unknown 69.3
2261 Male, age 18, unknown 67.9
Ventral tegmental area
nTPM: 87.5
2410 Female, age 72, unknown 107.6
1915 Female, age 42, unknown 89.4
2223 Female, age 72, unknown 88.0
1942 Male, age 51, unknown 85.3
2021 Male, age 53, unknown 78.3
2218 Male, age 76, both hemispheres 76.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.8
GTEx sample id Sample description nTPM
59.570.090.736.6136.8020406080100120140160180200
Brain - Substantia nigra
Average nTPM: 77.8
Samples: 139

Max nTPM: 201.8
Min nTPM: 36.6
Std nTPM: 26.9
Median nTPM: 70.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 201.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 183.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 162.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 136.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 135.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 132.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 129.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 127.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 123.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 121.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 118.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.4
Pig sample Sample description nTPM
38.343.045.930.548.4051015202530354045
 		Substantia nigra
nTPM: 41.2
Samples: 4

Max nTPM: 48.4
Min nTPM: 30.5
Sample A Female 45.1
Sample B Female 30.5
Sample C Male 40.9
Sample D Male 48.4
39.540.445.339.441.30510152025303540455055
 		Midbrain
nTPM: 44.4
Samples: 4

Max nTPM: 57.3
Min nTPM: 39.4
Sample A Female 57.3
Sample B Female 41.3
Sample C Male 39.5
Sample D Male 39.4
34.835.436.634.137.805101520253035
 		Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 37.8
Min nTPM: 34.1
Sample B Female 37.8
Sample C Male 35.4
Sample D Male 34.1
39.745.547.545.051.705101520253035404550
 		Superior colliculi
nTPM: 41.7
Samples: 4

Max nTPM: 51.7
Min nTPM: 23.8
Sample A Female 46.1
Sample B Female 23.8
Sample C Male 45.0
Sample D Male 51.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.4
Mouse sample Sample description nTPM
168.3178.7188.8164.0192.0020406080100120140160180
 		Midbrain
nTPM: 178.4
Samples: 4

Max nTPM: 192.0
Min nTPM: 164.0
Sample A Male 192.0
Sample B Male 169.7
Sample C Female 164.0
Sample D Female 187.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
69080509 Antisense, RP_050324_02_B10, Mouse strain C57BL/6J (56 days, male) 16.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org