MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.5 nTPM
HPA Brain:37.0 nTPM
GTEx:44.5 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:96.6 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.4
2019 Male, age 18, unknown 35.4
2411 Female, age 72, unknown 31.3
1870 Female, age 42, unknown 27.2
1833 Male, age 53, unknown 26.5
2219 Male, age 76, both hemispheres 26.5
1827 Male, age 72, unknown 26.1
1830 Male, age 51, unknown 24.9
2828 Female, age 72, unknown 23.6
2666 Male, age 74, left hemisphere 16.9
2586 Male, age 75, left hemisphere 15.3
Dorsal raphe nucleus
nTPM: 32.3
2298 Female, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 34.1
1828 Male, age 53, unknown 32.4
2047 Male, age 72, unknown 31.0
2016 Female, age 72, unknown 25.6
Inferior colliculus
nTPM: 25.9
2097 Female, age 72, unknown 32.2
1848 Female, age 42, unknown 25.4
1890 Male, age 53, unknown 24.5
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 33.3
2220 Male, age 76, midline 33.3
Periaquaductal grey, anterior
nTPM: 28.0
2502 Female, age 75, unknown 30.2
1947 Male, age 18, unknown 28.8
1795 Male, age 51, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 24.5
2850 Male, age 76, both hemispheres 27.3
1840 Male, age 53, unknown 25.4
2464 Female, age 72, unknown 23.9
1831 Male, age 72, unknown 21.5
Periaquaductal grey, lateral
nTPM: 27.5
2272 Male, age 74, both hemispheres 34.6
2140 Male, age 76, both hemispheres 26.4
2053 Male, age 18, unknown 21.4
Pretectal area
nTPM: 29.6
2273 Male, age 74, both hemispheres 37.4
1817 Female, age 42, unknown 33.7
2007 Male, age 72, unknown 33.3
2667 Female, age 75, unknown 31.9
1816 Male, age 51, unknown 31.3
1944 Female, age 72, unknown 31.1
2224 Female, age 72, unknown 28.4
1815 Male, age 53, unknown 28.3
2407 Male, age 75, both hemispheres 25.0
2825 Male, age 18, unknown 22.9
2316 Male, age 76, right hemisphere 22.4
Red nucleus
nTPM: 27.0
1821 Female, age 72, unknown 37.1
2725 Female, age 75, unknown 30.1
1865 Male, age 51, unknown 29.4
1954 Female, age 42, unknown 28.8
2785 Male, age 18, unknown 27.8
1904 Male, age 53, unknown 27.7
2823 Male, age 76, right hemisphere 27.4
2769 Male, age 72, unknown 26.4
2227 Male, age 72, unknown 25.9
2503 Female, age 72, unknown 24.8
2584 Male, age 75, left hemisphere 19.2
2588 Male, age 74, left hemisphere 18.8
Substantia nigra
nTPM: 37.0
2241 Male, age 72, unknown 51.4
1916 Female, age 42, unknown 50.6
1851 Male, age 51, unknown 42.4
1941 Male, age 53, unknown 40.3
1889 Female, age 72, unknown 35.5
2409 Female, age 72, unknown 35.5
2699 Male, age 18, unknown 34.2
2665 Male, age 74, both hemispheres 28.2
2583 Male, age 75, right hemisphere 26.1
2590 Female, age 75, unknown 25.3
Superior colliculus
nTPM: 26.1
2587 Male, age 74, left hemisphere 35.7
2087 Female, age 72, unknown 29.1
2261 Male, age 18, unknown 28.1
1796 Male, age 53, unknown 27.7
2668 Female, age 75, unknown 27.4
1895 Male, age 76, right hemisphere 26.6
1839 Male, age 51, unknown 23.4
1913 Female, age 42, unknown 23.1
1995 Male, age 72, unknown 21.7
2664 Male, age 75, both hemispheres 18.6
Ventral tegmental area
nTPM: 33.7
2410 Female, age 72, unknown 40.9
2218 Male, age 76, both hemispheres 39.1
1915 Female, age 42, unknown 37.0
2223 Female, age 72, unknown 31.0
1942 Male, age 51, unknown 28.8
2021 Male, age 53, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.5
Samples: 139

Max nTPM: 105.6
Min nTPM: 28.2
Std nTPM: 10.5
Median nTPM: 42.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 105.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 76.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 67.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 66.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 64.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 64.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 61.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 61.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 59.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.7
FF:10158-103A5 76 years, female 79.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 34.7
Min nTPM: 24.7
Sample A Female 34.7
Sample B Female 26.3
Sample C Male 33.7
Sample D Male 24.7
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 30.7
Min nTPM: 25.6
Sample A Female 30.7
Sample B Female 28.6
Sample C Male 30.4
Sample D Male 25.6
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 30.2
Min nTPM: 22.7
Sample B Female 24.3
Sample C Male 30.2
Sample D Male 22.7
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 26.6
Sample A Female 30.0
Sample B Female 29.5
Sample C Male 33.1
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.6
Samples: 4

Max nTPM: 98.4
Min nTPM: 94.9
Sample A Male 94.9
Sample B Male 95.9
Sample C Female 97.0
Sample D Female 98.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68269288 Antisense, RP_041129_01_E07, Mouse strain C57BL/6J (56 days, male) 3.0

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