MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.4 nTPM
HPA Brain:77.0 nTPM
GTEx:21.4 nTPM
FANTOM5:96.9 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:19.1 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
1827 Male, age 72, unknown 70.4
2411 Female, age 72, unknown 62.7
1833 Male, age 53, unknown 62.5
1870 Female, age 42, unknown 62.2
2586 Male, age 75, left hemisphere 62.2
2828 Female, age 72, unknown 61.9
1830 Male, age 51, unknown 60.9
2219 Male, age 76, both hemispheres 55.2
2666 Male, age 74, left hemisphere 47.2
2019 Male, age 18, unknown 46.5
Dorsal raphe nucleus
nTPM: 69.5
2016 Female, age 72, unknown 73.6
2298 Female, age 72, unknown 71.8
2047 Male, age 72, unknown 68.9
2750 Male, age 76, both hemispheres 68.2
1828 Male, age 53, unknown 64.8
Inferior colliculus
nTPM: 66.8
2097 Female, age 72, unknown 71.2
1848 Female, age 42, unknown 69.8
2849 Male, age 72, unknown 66.3
1890 Male, age 53, unknown 59.7
Median raphe nucleus
nTPM: 67.4
2220 Male, age 76, midline 67.4
Periaquaductal grey, anterior
nTPM: 64.7
1947 Male, age 18, unknown 71.8
2502 Female, age 75, unknown 62.5
1795 Male, age 51, unknown 59.8
Periaquaductal grey, dorsal
nTPM: 67.7
1840 Male, age 53, unknown 72.8
1831 Male, age 72, unknown 67.5
2850 Male, age 76, both hemispheres 67.5
2464 Female, age 72, unknown 63.1
Periaquaductal grey, lateral
nTPM: 67.9
2053 Male, age 18, unknown 71.8
2140 Male, age 76, both hemispheres 71.1
2272 Male, age 74, both hemispheres 60.7
Pretectal area
nTPM: 67.0
2667 Female, age 75, unknown 81.7
2224 Female, age 72, unknown 73.1
2825 Male, age 18, unknown 71.1
2273 Male, age 74, both hemispheres 70.3
1816 Male, age 51, unknown 69.4
2316 Male, age 76, right hemisphere 68.1
1944 Female, age 72, unknown 63.4
1815 Male, age 53, unknown 63.2
1817 Female, age 42, unknown 61.6
2407 Male, age 75, both hemispheres 58.2
2007 Male, age 72, unknown 57.3
Red nucleus
nTPM: 59.8
2725 Female, age 75, unknown 71.7
2823 Male, age 76, right hemisphere 65.5
2503 Female, age 72, unknown 65.3
1821 Female, age 72, unknown 64.7
2588 Male, age 74, left hemisphere 60.3
2769 Male, age 72, unknown 59.6
1954 Female, age 42, unknown 59.3
2584 Male, age 75, left hemisphere 58.7
1865 Male, age 51, unknown 55.6
2227 Male, age 72, unknown 55.2
1904 Male, age 53, unknown 53.3
2785 Male, age 18, unknown 48.1
Substantia nigra
nTPM: 77.0
2241 Male, age 72, unknown 87.7
1941 Male, age 53, unknown 85.0
2699 Male, age 18, unknown 81.9
1851 Male, age 51, unknown 80.3
1916 Female, age 42, unknown 76.7
2409 Female, age 72, unknown 76.3
2583 Male, age 75, right hemisphere 73.0
2665 Male, age 74, both hemispheres 71.7
1889 Female, age 72, unknown 69.5
2590 Female, age 75, unknown 68.2
Superior colliculus
nTPM: 64.7
1796 Male, age 53, unknown 75.1
2261 Male, age 18, unknown 74.4
1839 Male, age 51, unknown 68.2
2664 Male, age 75, both hemispheres 67.5
2087 Female, age 72, unknown 67.1
1895 Male, age 76, right hemisphere 64.3
2587 Male, age 74, left hemisphere 62.9
1995 Male, age 72, unknown 59.4
1913 Female, age 42, unknown 57.1
2668 Female, age 75, unknown 50.5
Ventral tegmental area
nTPM: 72.7
1915 Female, age 42, unknown 81.9
2218 Male, age 76, both hemispheres 75.4
2410 Female, age 72, unknown 70.3
1942 Male, age 51, unknown 69.9
2223 Female, age 72, unknown 69.6
2021 Male, age 53, unknown 69.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.4
Samples: 139

Max nTPM: 46.7
Min nTPM: 10.6
Std nTPM: 6.6
Median nTPM: 20.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 46.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 42.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 40.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 40.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 35.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 34.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 33.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 33.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.9
FF:10158-103A5 76 years, female 96.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.9
Samples: 4

Max nTPM: 69.0
Min nTPM: 56.1
Sample A Female 56.1
Sample B Female 61.3
Sample C Male 61.1
Sample D Male 69.0
Midbrain
nTPM: 58.3
Samples: 4

Max nTPM: 70.8
Min nTPM: 51.7
Sample A Female 70.8
Sample B Female 56.6
Sample C Male 51.7
Sample D Male 54.0
Periaqueductal gray
nTPM: 48.7
Samples: 3

Max nTPM: 55.5
Min nTPM: 45.2
Sample B Female 55.5
Sample C Male 45.2
Sample D Male 45.4
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 56.6
Min nTPM: 33.5
Sample A Female 50.5
Sample B Female 33.5
Sample C Male 45.8
Sample D Male 56.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.8
Sample A Male 17.8
Sample B Male 19.2
Sample C Female 21.0
Sample D Female 18.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69514452 Antisense, RP_050419_03_D03, Mouse strain C57BL/6J (56 days, male) 1.5

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