MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA Brain:16.8 nTPM
GTEx:35.8 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:30.8 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.3
2019 Male, age 18, unknown 14.9
2411 Female, age 72, unknown 14.6
1827 Male, age 72, unknown 11.8
2219 Male, age 76, both hemispheres 11.1
2666 Male, age 74, left hemisphere 10.7
2586 Male, age 75, left hemisphere 10.6
2828 Female, age 72, unknown 10.5
1833 Male, age 53, unknown 10.3
1870 Female, age 42, unknown 9.4
1830 Male, age 51, unknown 9.1
Dorsal raphe nucleus
nTPM: 11.8
1828 Male, age 53, unknown 13.2
2047 Male, age 72, unknown 13.0
2298 Female, age 72, unknown 13.0
2750 Male, age 76, both hemispheres 12.8
2016 Female, age 72, unknown 7.2
Inferior colliculus
nTPM: 10.2
2097 Female, age 72, unknown 11.2
2849 Male, age 72, unknown 10.5
1890 Male, age 53, unknown 10.0
1848 Female, age 42, unknown 9.2
Median raphe nucleus
nTPM: 16.8
2220 Male, age 76, midline 16.8
Periaquaductal grey, anterior
nTPM: 11.6
1795 Male, age 51, unknown 12.0
1947 Male, age 18, unknown 11.6
2502 Female, age 75, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 10.1
2850 Male, age 76, both hemispheres 11.2
1840 Male, age 53, unknown 10.3
2464 Female, age 72, unknown 9.9
1831 Male, age 72, unknown 8.9
Periaquaductal grey, lateral
nTPM: 7.9
2140 Male, age 76, both hemispheres 8.6
2272 Male, age 74, both hemispheres 7.9
2053 Male, age 18, unknown 7.3
Pretectal area
nTPM: 13.6
2007 Male, age 72, unknown 20.0
1817 Female, age 42, unknown 18.8
1816 Male, age 51, unknown 17.0
2224 Female, age 72, unknown 14.1
2407 Male, age 75, both hemispheres 13.5
2667 Female, age 75, unknown 13.4
1944 Female, age 72, unknown 12.6
1815 Male, age 53, unknown 12.5
2825 Male, age 18, unknown 10.4
2316 Male, age 76, right hemisphere 9.7
2273 Male, age 74, both hemispheres 7.4
Red nucleus
nTPM: 10.3
2785 Male, age 18, unknown 13.7
2725 Female, age 75, unknown 13.0
1821 Female, age 72, unknown 12.7
2503 Female, age 72, unknown 11.0
2584 Male, age 75, left hemisphere 10.8
2588 Male, age 74, left hemisphere 10.8
1904 Male, age 53, unknown 9.8
2227 Male, age 72, unknown 9.7
1954 Female, age 42, unknown 9.3
1865 Male, age 51, unknown 8.2
2823 Male, age 76, right hemisphere 7.4
2769 Male, age 72, unknown 7.0
Substantia nigra
nTPM: 11.8
1916 Female, age 42, unknown 15.6
1889 Female, age 72, unknown 13.8
1941 Male, age 53, unknown 13.5
2665 Male, age 74, both hemispheres 12.7
2241 Male, age 72, unknown 12.4
1851 Male, age 51, unknown 11.9
2409 Female, age 72, unknown 11.0
2583 Male, age 75, right hemisphere 9.8
2590 Female, age 75, unknown 9.2
2699 Male, age 18, unknown 7.9
Superior colliculus
nTPM: 9.5
2587 Male, age 74, left hemisphere 12.5
1839 Male, age 51, unknown 11.4
1796 Male, age 53, unknown 11.3
2261 Male, age 18, unknown 10.3
1895 Male, age 76, right hemisphere 9.6
2087 Female, age 72, unknown 9.4
2668 Female, age 75, unknown 9.3
1995 Male, age 72, unknown 7.7
2664 Male, age 75, both hemispheres 7.6
1913 Female, age 42, unknown 6.2
Ventral tegmental area
nTPM: 11.9
1915 Female, age 42, unknown 14.5
2410 Female, age 72, unknown 13.8
2218 Male, age 76, both hemispheres 12.2
2223 Female, age 72, unknown 11.8
1942 Male, age 51, unknown 10.4
2021 Male, age 53, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.8
Samples: 139

Max nTPM: 100.1
Min nTPM: 9.7
Std nTPM: 15.0
Median nTPM: 33.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 100.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 91.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 87.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 79.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 75.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 68.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 68.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 62.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 59.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 58.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.9
FF:10158-103A5 76 years, female 61.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.5
Samples: 4

Max nTPM: 47.8
Min nTPM: 18.9
Sample A Female 43.9
Sample B Female 27.4
Sample C Male 47.8
Sample D Male 18.9
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 47.8
Min nTPM: 19.1
Sample A Female 19.1
Sample B Female 30.5
Sample C Male 47.8
Sample D Male 43.7
Periaqueductal gray
nTPM: 33.2
Samples: 3

Max nTPM: 42.4
Min nTPM: 27.0
Sample B Female 27.0
Sample C Male 42.4
Sample D Male 30.3
Superior colliculi
nTPM: 39.1
Samples: 4

Max nTPM: 44.5
Min nTPM: 29.2
Sample A Female 44.5
Sample B Female 29.2
Sample C Male 43.4
Sample D Male 39.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 29.0
Sample A Male 29.8
Sample B Male 29.0
Sample C Female 32.3
Sample D Female 32.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
69059968 Antisense, RP_050317_04_H01, Mouse strain C57BL/6J (56 days, male) 8.9

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