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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
65.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 65.1
Samples: 152
Max nTPM: 161.5
Min nTPM: 0.8
Std nTPM: 34.1
Median nTPM: 60.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
161.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
157.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
153.1
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
137.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
136.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
135.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
133.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
128.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
127.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
125.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
121.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
121.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
117.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
115.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
107.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
105.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
104.4
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
103.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
103.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
102.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
101.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
100.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
100.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
99.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
99.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
98.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
96.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
95.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
94.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
94.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
94.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
93.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
93.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
93.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
92.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
92.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
90.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
89.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
89.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
88.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
88.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
87.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
84.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
84.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
84.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
83.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
80.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
79.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
79.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
79.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
79.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
78.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
76.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
76.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
75.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
75.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
74.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
73.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
72.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
72.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
72.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
70.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
69.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
68.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
68.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
68.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
66.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
66.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
65.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
65.1
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
63.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
63.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
63.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
61.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
61.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
60.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
60.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
59.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
59.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
58.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
58.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
58.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
58.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
58.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
57.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
56.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
56.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
55.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
54.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
54.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
54.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
54.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
53.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
53.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
53.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
52.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
52.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
50.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
50.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
50.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
47.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
46.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
46.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
46.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
44.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
43.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
43.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
42.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
42.0
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
41.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
41.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
40.2
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
40.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
40.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
39.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
39.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
38.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
37.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
36.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
34.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
33.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
32.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
32.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
32.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
32.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
31.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
29.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
27.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
27.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
27.0
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
26.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
25.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
25.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
25.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
25.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
24.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
24.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
23.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
23.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
21.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
20.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
19.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
17.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
15.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
15.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
13.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
11.1
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
9.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
7.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
6.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
1.8
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
0.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
289.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 289.5
Samples: 4
Max nTPM: 295.6
Min nTPM: 286.3
Sample A
Male
289.6
Sample B
Male
295.6
Sample C
Female
286.5
Sample D
Female
286.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
