MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:159.5 nTPM
HPA Brain:107.5 nTPM
GTEx:159.5 nTPM
FANTOM5:269.2 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:108.4 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.0
1870 Female, age 42, unknown 110.1
2411 Female, age 72, unknown 98.5
1830 Male, age 51, unknown 94.8
2828 Female, age 72, unknown 91.3
2019 Male, age 18, unknown 90.9
1833 Male, age 53, unknown 89.8
2666 Male, age 74, left hemisphere 65.1
1827 Male, age 72, unknown 61.4
2219 Male, age 76, both hemispheres 52.7
2586 Male, age 75, left hemisphere 35.9
Dorsal raphe nucleus
nTPM: 99.0
2016 Female, age 72, unknown 106.8
2750 Male, age 76, both hemispheres 104.3
1828 Male, age 53, unknown 102.1
2298 Female, age 72, unknown 98.9
2047 Male, age 72, unknown 83.1
Inferior colliculus
nTPM: 75.7
1848 Female, age 42, unknown 84.1
2097 Female, age 72, unknown 78.6
1890 Male, age 53, unknown 71.5
2849 Male, age 72, unknown 68.6
Median raphe nucleus
nTPM: 88.5
2220 Male, age 76, midline 88.5
Periaquaductal grey, anterior
nTPM: 72.4
2502 Female, age 75, unknown 83.2
1795 Male, age 51, unknown 67.9
1947 Male, age 18, unknown 66.0
Periaquaductal grey, dorsal
nTPM: 93.2
2850 Male, age 76, both hemispheres 118.7
1831 Male, age 72, unknown 88.2
2464 Female, age 72, unknown 87.5
1840 Male, age 53, unknown 78.4
Periaquaductal grey, lateral
nTPM: 98.4
2140 Male, age 76, both hemispheres 107.3
2272 Male, age 74, both hemispheres 94.7
2053 Male, age 18, unknown 93.1
Pretectal area
nTPM: 74.4
2273 Male, age 74, both hemispheres 102.4
2316 Male, age 76, right hemisphere 93.1
2224 Female, age 72, unknown 86.1
2667 Female, age 75, unknown 78.5
2825 Male, age 18, unknown 77.5
1817 Female, age 42, unknown 76.6
1815 Male, age 53, unknown 71.5
1944 Female, age 72, unknown 62.3
2407 Male, age 75, both hemispheres 60.7
2007 Male, age 72, unknown 59.0
1816 Male, age 51, unknown 50.4
Red nucleus
nTPM: 107.5
1821 Female, age 72, unknown 143.5
1954 Female, age 42, unknown 140.2
1865 Male, age 51, unknown 135.4
2769 Male, age 72, unknown 129.7
2227 Male, age 72, unknown 124.9
1904 Male, age 53, unknown 118.8
2823 Male, age 76, right hemisphere 113.2
2503 Female, age 72, unknown 102.3
2785 Male, age 18, unknown 87.8
2725 Female, age 75, unknown 79.8
2588 Male, age 74, left hemisphere 61.4
2584 Male, age 75, left hemisphere 52.6
Substantia nigra
nTPM: 86.1
2699 Male, age 18, unknown 108.1
2409 Female, age 72, unknown 97.9
1851 Male, age 51, unknown 90.9
2241 Male, age 72, unknown 90.3
2590 Female, age 75, unknown 90.2
1941 Male, age 53, unknown 83.6
1916 Female, age 42, unknown 82.1
2665 Male, age 74, both hemispheres 80.9
1889 Female, age 72, unknown 76.3
2583 Male, age 75, right hemisphere 60.3
Superior colliculus
nTPM: 76.3
1913 Female, age 42, unknown 102.6
2587 Male, age 74, left hemisphere 102.0
1995 Male, age 72, unknown 93.9
1839 Male, age 51, unknown 80.3
1895 Male, age 76, right hemisphere 77.6
2668 Female, age 75, unknown 72.6
2087 Female, age 72, unknown 64.3
1796 Male, age 53, unknown 62.7
2261 Male, age 18, unknown 61.1
2664 Male, age 75, both hemispheres 46.0
Ventral tegmental area
nTPM: 95.9
2223 Female, age 72, unknown 114.5
2410 Female, age 72, unknown 102.6
2021 Male, age 53, unknown 101.2
1915 Female, age 42, unknown 95.2
2218 Male, age 76, both hemispheres 85.9
1942 Male, age 51, unknown 75.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.5
Samples: 139

Max nTPM: 303.1
Min nTPM: 73.0
Std nTPM: 46.0
Median nTPM: 150.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 303.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 297.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 289.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 274.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 271.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 270.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 243.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 241.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 235.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 233.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 226.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 269.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 269.2
FF:10158-103A5 76 years, female 269.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 38.9
Min nTPM: 31.7
Sample A Female 38.9
Sample B Female 34.1
Sample C Male 31.7
Sample D Male 36.4
Midbrain
nTPM: 37.6
Samples: 4

Max nTPM: 92.3
Min nTPM: 14.6
Sample A Female 92.3
Sample B Female 25.1
Sample C Male 18.5
Sample D Male 14.6
Periaqueductal gray
nTPM: 29.7
Samples: 3

Max nTPM: 30.1
Min nTPM: 29.3
Sample B Female 29.3
Sample C Male 30.1
Sample D Male 29.8
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 32.5
Sample C Male 23.9
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 108.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.4
Samples: 4

Max nTPM: 112.3
Min nTPM: 103.3
Sample A Male 112.3
Sample B Male 108.8
Sample C Female 103.3
Sample D Female 109.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
77454635 Antisense, RP_070129_01_B05, Mouse strain C57BL/6J (56 days, male) 4.4
79488933 Antisense, RP_070129_01_B05, Mouse strain C57BL/6J (56 days, male) 2.4

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