MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:43.5 nTPM
GTEx:7.7 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:25.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.6
2019 Male, age 18, unknown 62.2
2411 Female, age 72, unknown 35.9
1827 Male, age 72, unknown 35.4
2586 Male, age 75, left hemisphere 35.3
2666 Male, age 74, left hemisphere 34.2
2219 Male, age 76, both hemispheres 32.2
1830 Male, age 51, unknown 30.0
1833 Male, age 53, unknown 28.8
1870 Female, age 42, unknown 28.6
2828 Female, age 72, unknown 23.1
Dorsal raphe nucleus
nTPM: 40.7
1828 Male, age 53, unknown 50.2
2298 Female, age 72, unknown 47.2
2047 Male, age 72, unknown 43.2
2750 Male, age 76, both hemispheres 32.4
2016 Female, age 72, unknown 30.3
Inferior colliculus
nTPM: 35.8
2097 Female, age 72, unknown 45.8
1890 Male, age 53, unknown 39.5
1848 Female, age 42, unknown 32.4
2849 Male, age 72, unknown 25.6
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Periaquaductal grey, anterior
nTPM: 40.2
2502 Female, age 75, unknown 48.1
1947 Male, age 18, unknown 38.9
1795 Male, age 51, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 30.8
2850 Male, age 76, both hemispheres 32.7
2464 Female, age 72, unknown 30.8
1831 Male, age 72, unknown 30.7
1840 Male, age 53, unknown 29.0
Periaquaductal grey, lateral
nTPM: 31.7
2272 Male, age 74, both hemispheres 43.6
2140 Male, age 76, both hemispheres 27.2
2053 Male, age 18, unknown 24.2
Pretectal area
nTPM: 43.5
2007 Male, age 72, unknown 63.4
1817 Female, age 42, unknown 61.6
1944 Female, age 72, unknown 55.3
1816 Male, age 51, unknown 52.3
2273 Male, age 74, both hemispheres 43.3
1815 Male, age 53, unknown 42.7
2224 Female, age 72, unknown 40.5
2667 Female, age 75, unknown 38.1
2407 Male, age 75, both hemispheres 29.3
2825 Male, age 18, unknown 26.8
2316 Male, age 76, right hemisphere 25.6
Red nucleus
nTPM: 38.0
1821 Female, age 72, unknown 55.4
2785 Male, age 18, unknown 53.1
1954 Female, age 42, unknown 41.0
1865 Male, age 51, unknown 40.4
2227 Male, age 72, unknown 37.3
2769 Male, age 72, unknown 36.3
1904 Male, age 53, unknown 35.5
2503 Female, age 72, unknown 35.5
2823 Male, age 76, right hemisphere 35.5
2584 Male, age 75, left hemisphere 30.4
2725 Female, age 75, unknown 29.6
2588 Male, age 74, left hemisphere 25.9
Substantia nigra
nTPM: 38.1
1889 Female, age 72, unknown 53.3
1916 Female, age 42, unknown 48.1
1941 Male, age 53, unknown 45.9
2241 Male, age 72, unknown 38.7
1851 Male, age 51, unknown 38.3
2409 Female, age 72, unknown 33.8
2665 Male, age 74, both hemispheres 33.4
2590 Female, age 75, unknown 31.2
2583 Male, age 75, right hemisphere 30.5
2699 Male, age 18, unknown 27.8
Superior colliculus
nTPM: 33.9
2668 Female, age 75, unknown 45.1
2087 Female, age 72, unknown 42.6
1895 Male, age 76, right hemisphere 37.2
2664 Male, age 75, both hemispheres 35.6
2261 Male, age 18, unknown 33.6
2587 Male, age 74, left hemisphere 33.0
1839 Male, age 51, unknown 32.1
1796 Male, age 53, unknown 28.2
1913 Female, age 42, unknown 25.7
1995 Male, age 72, unknown 25.6
Ventral tegmental area
nTPM: 34.4
2410 Female, age 72, unknown 40.2
1915 Female, age 42, unknown 36.4
2218 Male, age 76, both hemispheres 36.3
1942 Male, age 51, unknown 33.4
2223 Female, age 72, unknown 31.1
2021 Male, age 53, unknown 28.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 53.3
Min nTPM: 2.0
Std nTPM: 5.5
Median nTPM: 6.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 53.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 17.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 17.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 17.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 16.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 15.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 14.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 13.2
Min nTPM: 7.9
Sample A Female 13.2
Sample B Female 9.1
Sample C Male 12.1
Sample D Male 7.9
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 10.9
Sample C Male 14.4
Sample D Male 12.8
Periaqueductal gray
nTPM: 13.0
Samples: 3

Max nTPM: 13.8
Min nTPM: 11.8
Sample B Female 11.8
Sample C Male 13.8
Sample D Male 13.3
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 15.0
Min nTPM: 10.2
Sample A Female 15.0
Sample B Female 10.2
Sample C Male 15.0
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 28.7
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 26.8
Sample C Female 28.7
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70218890 Antisense, RP_050524_01_E05, Mouse strain C57BL/6J (56 days, male) 0.3

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