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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
52.3
nTPM
Monaco:
34.2
nTPM
Schmiedel:
48.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
52.3
HPA sample
nTPM
gdT-cell nTPM: 25.9
Samples: 6
Max nTPM: 35.4
Min nTPM: 14.8
P10809_1007
14.8
P10809_1022
26.8
P10809_1041
26.5
P10809_1060
33.8
P10809_1077
18.0
P10809_1098
35.4
MAIT T-cell nTPM: 28.5
Samples: 6
Max nTPM: 34.7
Min nTPM: 22.3
P10809_1006
25.5
P10809_1024
34.7
P10809_1043
24.7
P10809_1062
29.1
P10809_1083
22.3
P10809_1097
34.4
Memory CD4 T-cell nTPM: 24.3
Samples: 6
Max nTPM: 33.6
Min nTPM: 19.4
P10809_1014
19.4
P10809_1026
19.5
P10809_1045
19.9
P10809_1064
33.6
P10809_1086
29.5
P10809_1113
23.7
Memory CD8 T-cell nTPM: 38.0
Samples: 5
Max nTPM: 53.5
Min nTPM: 20.5
P10809_1012
21.4
P10809_1027
48.9
P10809_1046
20.5
P10809_1065
45.6
P10809_1111
53.5
Naive CD4 T-cell nTPM: 17.5
Samples: 6
Max nTPM: 21.4
Min nTPM: 11.3
P10809_1015
17.0
P10809_1030
17.7
P10809_1049
11.3
P10809_1068
21.4
P10809_1085
16.6
P10809_1112
20.9
Naive CD8 T-cell nTPM: 27.0
Samples: 6
Max nTPM: 42.7
Min nTPM: 10.4
P10809_1016
10.4
P10809_1031
24.7
P10809_1050
23.4
P10809_1069
28.9
P10809_1087
42.7
P10809_1110
32.0
T-reg nTPM: 52.3
Samples: 6
Max nTPM: 69.9
Min nTPM: 23.1
P10809_1018
55.8
P10809_1037
69.9
P10809_1056
45.4
P10809_1075
59.6
P10809_1094
23.1
P10809_1106
60.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
34.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 14.7
Samples: 4
Max nTPM: 23.9
Min nTPM: 8.8
RHH5202_R3573
23.9
RHH5230_R3602
10.7
RHH5259_R3631
15.3
RHH5288_R3660
8.8
Effector memory CD8 T-cell nTPM: 34.2
Samples: 4
Max nTPM: 56.6
Min nTPM: 21.4
RHH5203_R3574
56.6
RHH5231_R3603
21.4
RHH5260_R3632
30.9
RHH5289_R3661
28.0
MAIT T-cell nTPM: 14.7
Samples: 4
Max nTPM: 19.0
Min nTPM: 12.6
RHH5233_R3605
12.6
RHH5205_R3576
19.0
RHH5262_R3634
13.9
RHH5297_R3663
13.1
Memory CD4 T-cell TFH nTPM: 11.8
Samples: 4
Max nTPM: 17.8
Min nTPM: 7.0
RHH5300_R3666
7.0
RHH5236_R3608
7.0
RHH5265_R3637
17.8
RHH5208_R3579
15.5
Memory CD4 T-cell Th1 nTPM: 14.6
Samples: 4
Max nTPM: 19.2
Min nTPM: 7.4
RHH5210_R3581
19.2
RHH5302_R3668
14.2
RHH5238_R3610
7.4
RHH5267_R3639
17.6
Memory CD4 T-cell Th1/Th17 nTPM: 10.7
Samples: 4
Max nTPM: 14.2
Min nTPM: 7.5
RHH5303_R3669
7.5
RHH5211_R3582
11.8
RHH5239_R3611
14.2
RHH5268_R3640
9.4
Memory CD4 T-cell Th17 nTPM: 11.6
Samples: 4
Max nTPM: 19.0
Min nTPM: 6.3
RHH5304_R3670
11.8
RHH5212_R3583
6.3
RHH5240_R3612
19.0
RHH5269_R3641
9.2
Memory CD4 T-cell Th2 nTPM: 8.4
Samples: 4
Max nTPM: 11.5
Min nTPM: 5.6
RHH5305_R3671
5.6
RHH5213_R3584
9.7
RHH5241_R3613
6.9
RHH5270_R3642
11.5
Naive CD4 T-cell nTPM: 5.8
Samples: 4
Max nTPM: 9.2
Min nTPM: 3.7
RHH5306_R3672
5.6
RHH5214_R3585
3.7
RHH5242_R3614
9.2
RHH5271_R3643
4.7
Naive CD8 T-cell nTPM: 7.4
Samples: 4
Max nTPM: 11.6
Min nTPM: 4.4
RHH5201_R3572
4.4
RHH5229_R3601
11.6
RHH5258_R3630
6.7
RHH5287_R3659
6.8
Non-Vd2 gdTCR nTPM: 21.8
Samples: 4
Max nTPM: 27.5
Min nTPM: 15.9
RHH5235_R3607
20.5
RHH5264_R3636
27.5
RHH5207_R3578
15.9
RHH5299_R3665
23.2
T-reg nTPM: 15.9
Samples: 4
Max nTPM: 22.9
Min nTPM: 9.1
RHH5301_R3667
16.9
RHH5237_R3609
22.9
RHH5266_R3638
14.8
RHH5209_R3580
9.1
Terminal effector memory CD4 T-cell nTPM: 7.2
Samples: 2
Max nTPM: 9.9
Min nTPM: 4.5
RHH5243_R3615
9.9
RHH5272_R3644
4.5
Terminal effector memory CD8 T-cell nTPM: 13.7
Samples: 4
Max nTPM: 16.8
Min nTPM: 10.5
RHH5232_R3604
14.9
RHH5204_R3575
16.8
RHH5261_R3633
10.5
RHH5296_R3662
12.7
Vd2 gdTCR nTPM: 12.4
Samples: 4
Max nTPM: 21.6
Min nTPM: 7.5
RHH5234_R3606
10.9
RHH5206_R3577
21.6
RHH5263_R3635
7.5
RHH5298_R3664
9.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
