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HCN1
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  • HCN1
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HCN1
Synonyms BCNG-1, BCNG1, HAC-2
Gene descriptioni

Full gene name according to HGNC.

Hyperpolarization activated cyclic nucleotide gated potassium channel 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Plasma proteins
Potential drug targets
Transporters
Voltage-gated ion channels
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband p12
Chromosome location (bp) 45254948 - 45696498
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000164588 (version 109)
Entrez gene 348980
HGNC HGNC:4845
UniProt O60741 (UniProt - Evidence at protein level)
neXtProt NX_O60741
GeneCards HCN1
Antibodypedia HCN1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Hyperpolarization-activated ion channel exhibiting weak selectivity for potassium over sodium ions 1. Contributes to the native pacemaker currents in heart (If) and in neurons (Ih). May mediate responses to sour stimuli.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Ion channel, Ligand-gated ion channel, Potassium channel, Sodium channel, Voltage-gated channel
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Potassium transport, Sodium transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

cAMP, cAMP-binding, Nucleotide-binding, Potassium, Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

The membrane protein encoded by this gene is a hyperpolarization-activated cation channel that contributes to the native pacemaker currents in heart and neurons. The encoded protein can homodimerize or heterodimerize with other pore-forming subunits to form a potassium channel. This channel may act as a receptor for sour tastes. [provided by RefSeq, Oct 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HCN1-201
ENSP00000307342
ENST00000303230
O60741
[Direct mapping] Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Show all
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Cyclic Nucleotide-Regulated Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003254 [regulation of membrane depolarization]
GO:0005216 [ion channel activity]
GO:0005222 [intracellular cAMP-activated cation channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005249 [voltage-gated potassium channel activity]
GO:0005267 [potassium channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006811 [ion transport]
GO:0006813 [potassium ion transport]
GO:0006814 [sodium ion transport]
GO:0016020 [membrane]
GO:0019228 [neuronal action potential]
GO:0022843 [voltage-gated cation channel activity]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0030552 [cAMP binding]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042391 [regulation of membrane potential]
GO:0042802 [identical protein binding]
GO:0045176 [apical protein localization]
GO:0045211 [postsynaptic membrane]
GO:0046549 [retinal cone cell development]
GO:0048787 [presynaptic active zone membrane]
GO:0051289 [protein homotetramerization]
GO:0051867 [general adaptation syndrome, behavioral process]
GO:0051967 [negative regulation of synaptic transmission, glutamatergic]
GO:0055085 [transmembrane transport]
GO:0060078 [regulation of postsynaptic membrane potential]
GO:0071320 [cellular response to cAMP]
GO:0071805 [potassium ion transmembrane transport]
GO:0086091 [regulation of heart rate by cardiac conduction]
GO:0098855 [HCN channel complex]
GO:0098907 [regulation of SA node cell action potential]
GO:0098978 [glutamatergic synapse]
GO:0110165 [cellular anatomical entity]
GO:0140232 [intracellular cAMP-activated cation channel activity involved in regulation of presynaptic membrane potential]
GO:2001257 [regulation of cation channel activity]
Show all
890 aa
98.8 kDa
No 5
HCN1-202
ENSP00000489134
ENST00000634658
A0A0U1RQR7
[Direct mapping] Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0005216 [ion channel activity]
GO:0005249 [voltage-gated potassium channel activity]
GO:0005887 [integral component of plasma membrane]
GO:0006811 [ion transport]
GO:0016020 [membrane]
GO:0030552 [cAMP binding]
GO:0034220 [ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0055085 [transmembrane transport]
GO:0071805 [potassium ion transmembrane transport]
Show all
295 aa
32.6 kDa
No 3
HCN1-206
ENSP00000501107
ENST00000673735
A0A669KB45
[Direct mapping] Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0005216 [ion channel activity]
GO:0005249 [voltage-gated potassium channel activity]
GO:0005272 [sodium channel activity]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006811 [ion transport]
GO:0006813 [potassium ion transport]
GO:0006814 [sodium ion transport]
GO:0016020 [membrane]
GO:0030552 [cAMP binding]
GO:0034220 [ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0055085 [transmembrane transport]
GO:0071805 [potassium ion transmembrane transport]
GO:0110165 [cellular anatomical entity]
Show all
607 aa
68.5 kDa
No 5

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